miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29283 5' -56 NC_006150.1 + 592 0.69 0.835025
Target:  5'- gGAGgGGgaaGgGCCGCGUGuucuugGCAGACCg -3'
miRNA:   3'- aUUCgCCg--UgCGGCGCAU------UGUCUGGg -5'
29283 5' -56 NC_006150.1 + 999 0.68 0.887037
Target:  5'- cUAGGCGGCGCaGCgaGCGccacacGCGGGCCg -3'
miRNA:   3'- -AUUCGCCGUG-CGg-CGCau----UGUCUGGg -5'
29283 5' -56 NC_006150.1 + 1035 0.73 0.628195
Target:  5'- gUAGGCGGCGCGCaggcagGCGaGGguGGCCUg -3'
miRNA:   3'- -AUUCGCCGUGCGg-----CGCaUUguCUGGG- -5'
29283 5' -56 NC_006150.1 + 2141 0.66 0.947291
Target:  5'- --cGCGGUAaccguaGCCGCGaccguACAGAacauCCCa -3'
miRNA:   3'- auuCGCCGUg-----CGGCGCau---UGUCU----GGG- -5'
29283 5' -56 NC_006150.1 + 8331 0.67 0.917835
Target:  5'- aGGGCGGCACuGaCUGCGcu---GGCCCa -3'
miRNA:   3'- aUUCGCCGUG-C-GGCGCauuguCUGGG- -5'
29283 5' -56 NC_006150.1 + 34980 0.67 0.917835
Target:  5'- aUGAGCGGCAaaaGCCuccaGUAACuaaAGuCCCg -3'
miRNA:   3'- -AUUCGCCGUg--CGGcg--CAUUG---UCuGGG- -5'
29283 5' -56 NC_006150.1 + 36564 1.09 0.004126
Target:  5'- cUAAGCGGCACGCCGCGUAACAGACCCc -3'
miRNA:   3'- -AUUCGCCGUGCGGCGCAUUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 36801 0.73 0.618173
Target:  5'- --cGCGGCGUGCCGCu---UAGACCCg -3'
miRNA:   3'- auuCGCCGUGCGGCGcauuGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 40210 0.67 0.917835
Target:  5'- ---aCGGCACGCCuucCGUGACAGAg-- -3'
miRNA:   3'- auucGCCGUGCGGc--GCAUUGUCUggg -5'
29283 5' -56 NC_006150.1 + 40858 0.66 0.942951
Target:  5'- --uGUaGCGCGUCaGCGUAGCAuGACCg -3'
miRNA:   3'- auuCGcCGUGCGG-CGCAUUGU-CUGGg -5'
29283 5' -56 NC_006150.1 + 41208 0.66 0.942951
Target:  5'- ---cCGGCAUGUgCGUGUGGCAGGCa- -3'
miRNA:   3'- auucGCCGUGCG-GCGCAUUGUCUGgg -5'
29283 5' -56 NC_006150.1 + 46751 0.68 0.873184
Target:  5'- gUAAGC-GCACGCaucuGCGU--UAGGCCCu -3'
miRNA:   3'- -AUUCGcCGUGCGg---CGCAuuGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 54876 0.69 0.835025
Target:  5'- gAGGCGGCAUGCguuaUGCuuacgacUGACAGGCUCg -3'
miRNA:   3'- aUUCGCCGUGCG----GCGc------AUUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 56283 0.67 0.923317
Target:  5'- -cAGCugGGCACGuCUGCGcgcugAACGGugCCc -3'
miRNA:   3'- auUCG--CCGUGC-GGCGCa----UUGUCugGG- -5'
29283 5' -56 NC_006150.1 + 62342 0.66 0.951407
Target:  5'- -uGGCGGaUACGgaccgaUGCGUGcgcaACAGGCCCc -3'
miRNA:   3'- auUCGCC-GUGCg-----GCGCAU----UGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 63222 0.66 0.938385
Target:  5'- -cGGCGGCAaaaagaagGCCGCugaGUucaaAGACCCa -3'
miRNA:   3'- auUCGCCGUg-------CGGCG---CAuug-UCUGGG- -5'
29283 5' -56 NC_006150.1 + 63690 0.7 0.818478
Target:  5'- cAAGCuGCGCGCCGUGUucgcgcaauACAGcUCCa -3'
miRNA:   3'- aUUCGcCGUGCGGCGCAu--------UGUCuGGG- -5'
29283 5' -56 NC_006150.1 + 69731 0.72 0.678197
Target:  5'- aAGGCGGUguugggccucaACGCCGCGUGuGCGGugUa -3'
miRNA:   3'- aUUCGCCG-----------UGCGGCGCAU-UGUCugGg -5'
29283 5' -56 NC_006150.1 + 70083 0.68 0.900026
Target:  5'- -uGGCGGUgGCGCUGCGUGG-AGGCUUg -3'
miRNA:   3'- auUCGCCG-UGCGGCGCAUUgUCUGGG- -5'
29283 5' -56 NC_006150.1 + 70281 0.73 0.628195
Target:  5'- -uGGCGGCgcuGCGCCGUcacgcCGGACCCg -3'
miRNA:   3'- auUCGCCG---UGCGGCGcauu-GUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.