miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29283 5' -56 NC_006150.1 + 40210 0.67 0.917835
Target:  5'- ---aCGGCACGCCuucCGUGACAGAg-- -3'
miRNA:   3'- auucGCCGUGCGGc--GCAUUGUCUggg -5'
29283 5' -56 NC_006150.1 + 147354 0.68 0.872469
Target:  5'- gGAGgGGCACggcaaaaGCCGCGgccgaGGCuGACCUu -3'
miRNA:   3'- aUUCgCCGUG-------CGGCGCa----UUGuCUGGG- -5'
29283 5' -56 NC_006150.1 + 221209 0.68 0.880216
Target:  5'- gGGGUGGCGCGCUGgCGUGAaGGGC-- -3'
miRNA:   3'- aUUCGCCGUGCGGC-GCAUUgUCUGgg -5'
29283 5' -56 NC_006150.1 + 217611 0.68 0.893641
Target:  5'- cUGAGCGugaaACGCCuGCGUAcuCGGACUCa -3'
miRNA:   3'- -AUUCGCcg--UGCGG-CGCAUu-GUCUGGG- -5'
29283 5' -56 NC_006150.1 + 110524 0.67 0.912126
Target:  5'- -cGGUGugguGCACGCCGUGUGGCA--UCCa -3'
miRNA:   3'- auUCGC----CGUGCGGCGCAUUGUcuGGG- -5'
29283 5' -56 NC_006150.1 + 118936 0.67 0.912126
Target:  5'- ----aGGCACGCCGCGcu-CAG-CUCg -3'
miRNA:   3'- auucgCCGUGCGGCGCauuGUCuGGG- -5'
29283 5' -56 NC_006150.1 + 142839 0.67 0.912126
Target:  5'- --cGUGGcCAUGUcuCGgGUGACGGAUCCg -3'
miRNA:   3'- auuCGCC-GUGCG--GCgCAUUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 34980 0.67 0.917835
Target:  5'- aUGAGCGGCAaaaGCCuccaGUAACuaaAGuCCCg -3'
miRNA:   3'- -AUUCGCCGUg--CGGcg--CAUUG---UCuGGG- -5'
29283 5' -56 NC_006150.1 + 105605 0.67 0.917835
Target:  5'- -cAGCGGCugGCCcCGUGACA--UCUu -3'
miRNA:   3'- auUCGCCGugCGGcGCAUUGUcuGGG- -5'
29283 5' -56 NC_006150.1 + 101167 0.69 0.858503
Target:  5'- --uGCgGGCACGUCGCGUcGACGaGCUCu -3'
miRNA:   3'- auuCG-CCGUGCGGCGCA-UUGUcUGGG- -5'
29283 5' -56 NC_006150.1 + 123978 0.69 0.850865
Target:  5'- -cAGgGGCACGCCGUGgcguc-GCCCu -3'
miRNA:   3'- auUCgCCGUGCGGCGCauugucUGGG- -5'
29283 5' -56 NC_006150.1 + 113070 0.69 0.850865
Target:  5'- --uGCGGCGUGCCGUgcaGUGACGacuuGACCUg -3'
miRNA:   3'- auuCGCCGUGCGGCG---CAUUGU----CUGGG- -5'
29283 5' -56 NC_006150.1 + 116005 0.81 0.270193
Target:  5'- --uGCGGCcuauccACGCCggcuGCGUGGCGGACCCa -3'
miRNA:   3'- auuCGCCG------UGCGG----CGCAUUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 73700 0.71 0.743582
Target:  5'- cAAGCGGCG-GCCGCGacGCGGAagucuucuguccccCCCu -3'
miRNA:   3'- aUUCGCCGUgCGGCGCauUGUCU--------------GGG- -5'
29283 5' -56 NC_006150.1 + 129653 0.71 0.74643
Target:  5'- --cGUGGCcCGCCuCGUcGCGGACCUg -3'
miRNA:   3'- auuCGCCGuGCGGcGCAuUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 215419 0.7 0.792458
Target:  5'- gAGGCGGCuGCGaaCCGCacaugGACAGugCCg -3'
miRNA:   3'- aUUCGCCG-UGC--GGCGca---UUGUCugGG- -5'
29283 5' -56 NC_006150.1 + 143553 0.7 0.792458
Target:  5'- -cGGCGGCGCGCCaGC--AGCGGcGCCUc -3'
miRNA:   3'- auUCGCCGUGCGG-CGcaUUGUC-UGGG- -5'
29283 5' -56 NC_006150.1 + 120574 0.7 0.809957
Target:  5'- --cGCGGCccagcuacaACgGCCgGCGUGAC-GACCCa -3'
miRNA:   3'- auuCGCCG---------UG-CGG-CGCAUUGuCUGGG- -5'
29283 5' -56 NC_006150.1 + 63690 0.7 0.818478
Target:  5'- cAAGCuGCGCGCCGUGUucgcgcaauACAGcUCCa -3'
miRNA:   3'- aUUCGcCGUGCGGCGCAu--------UGUCuGGG- -5'
29283 5' -56 NC_006150.1 + 54876 0.69 0.835025
Target:  5'- gAGGCGGCAUGCguuaUGCuuacgacUGACAGGCUCg -3'
miRNA:   3'- aUUCGCCGUGCG----GCGc------AUUGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.