miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29284 3' -61.2 NC_006150.1 + 1991 0.66 0.818196
Target:  5'- aCGGCCUCGCcuGCAGcugaACcGCGCGugugcCCGa -3'
miRNA:   3'- cGCCGGAGCG--CGUC----UGaCGCGU-----GGCc -5'
29284 3' -61.2 NC_006150.1 + 92450 0.66 0.818196
Target:  5'- aGCGGCgaggagGCGguGACcGUGuCGCCGGc -3'
miRNA:   3'- -CGCCGgag---CGCguCUGaCGC-GUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 139417 0.66 0.818196
Target:  5'- aGCGGUC-CGCGCAGACguuugaacGUGaGCCa- -3'
miRNA:   3'- -CGCCGGaGCGCGUCUGa-------CGCgUGGcc -5'
29284 3' -61.2 NC_006150.1 + 109186 0.66 0.810061
Target:  5'- aGCgGGCUguguugCGUGCAGACgagGCGCAggauUUGGc -3'
miRNA:   3'- -CG-CCGGa-----GCGCGUCUGa--CGCGU----GGCC- -5'
29284 3' -61.2 NC_006150.1 + 119543 0.66 0.810061
Target:  5'- cGCGGCgucuuuggCGCGCucuACcGCGCugCGGc -3'
miRNA:   3'- -CGCCGga------GCGCGuc-UGaCGCGugGCC- -5'
29284 3' -61.2 NC_006150.1 + 173649 0.66 0.801785
Target:  5'- uCGGCCUUGaGCu-GCUGCaaauccacuGCACCGGc -3'
miRNA:   3'- cGCCGGAGCgCGucUGACG---------CGUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 220007 0.66 0.801785
Target:  5'- cGCGGCCaCGC-CAGGucCUGC-CGCCGc -3'
miRNA:   3'- -CGCCGGaGCGcGUCU--GACGcGUGGCc -5'
29284 3' -61.2 NC_006150.1 + 1011 0.66 0.801785
Target:  5'- gGUGGCCUgaCGC-UAGGCgGCGCAgCGa -3'
miRNA:   3'- -CGCCGGA--GCGcGUCUGaCGCGUgGCc -5'
29284 3' -61.2 NC_006150.1 + 152234 0.66 0.784838
Target:  5'- uCGGCCaccgcCGCGCAGA--GCGuCGCCGc -3'
miRNA:   3'- cGCCGGa----GCGCGUCUgaCGC-GUGGCc -5'
29284 3' -61.2 NC_006150.1 + 88247 0.66 0.782253
Target:  5'- aGCGGCCgCGCagcccuggcgggggGCGGAgCgUGCGCucgGCUGGg -3'
miRNA:   3'- -CGCCGGaGCG--------------CGUCU-G-ACGCG---UGGCC- -5'
29284 3' -61.2 NC_006150.1 + 770 0.66 0.782253
Target:  5'- cGCcGCCUaGCGuCAGGCcacccucgccugccUGCGCGCCGc -3'
miRNA:   3'- -CGcCGGAgCGC-GUCUG--------------ACGCGUGGCc -5'
29284 3' -61.2 NC_006150.1 + 1994 0.67 0.757642
Target:  5'- gGgGGCCUcCGCggucugggcugagGCGGuCUGCGgUGCCGGu -3'
miRNA:   3'- -CgCCGGA-GCG-------------CGUCuGACGC-GUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 184139 0.67 0.749562
Target:  5'- uUGGCCg-GCGCAGGUggagGCGCAgUGGa -3'
miRNA:   3'- cGCCGGagCGCGUCUGa---CGCGUgGCC- -5'
29284 3' -61.2 NC_006150.1 + 72273 0.67 0.749562
Target:  5'- gGCGGCCUCG-GCAGcggccaguuCUGCG-ACCu- -3'
miRNA:   3'- -CGCCGGAGCgCGUCu--------GACGCgUGGcc -5'
29284 3' -61.2 NC_006150.1 + 92369 0.67 0.749562
Target:  5'- -gGGCCggGCGguggggauuCGGGCgagucGCGCACCGGc -3'
miRNA:   3'- cgCCGGagCGC---------GUCUGa----CGCGUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 206660 0.67 0.737763
Target:  5'- aGCGGCCUCcaccuCGguGGCUuggggaaagucgcaGCGCACaugaGGc -3'
miRNA:   3'- -CGCCGGAGc----GCguCUGA--------------CGCGUGg---CC- -5'
29284 3' -61.2 NC_006150.1 + 120970 0.67 0.731353
Target:  5'- cGCGGCUUCuCGUAGGgUGCG-ACCa- -3'
miRNA:   3'- -CGCCGGAGcGCGUCUgACGCgUGGcc -5'
29284 3' -61.2 NC_006150.1 + 136321 0.67 0.725829
Target:  5'- cGCGGCUuccaggaucucuagcUCGUGCuGAUcggUGCgaauuuGCACCGGa -3'
miRNA:   3'- -CGCCGG---------------AGCGCGuCUG---ACG------CGUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 111508 0.67 0.712843
Target:  5'- gGCGGCUgagauggucgUCGCGCAGAaCUaC-CACUGGg -3'
miRNA:   3'- -CGCCGG----------AGCGCGUCU-GAcGcGUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 129653 0.68 0.703495
Target:  5'- cGUGGCCcgccUCGuCGCGGACcugccugcugUGCGCGCUc- -3'
miRNA:   3'- -CGCCGG----AGC-GCGUCUG----------ACGCGUGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.