Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29319 | 5' | -51.2 | NC_006150.1 | + | 137821 | 0.66 | 0.998259 |
Target: 5'- gCGCuGAGUGGaGAGGCGCggcagGCGg -3' miRNA: 3'- gGUGcUUCAUUcCUCCGCGaaa--CGCg -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 117621 | 0.66 | 0.996595 |
Target: 5'- gCACGuAGUucuugaaAGGCGCUggGCGCc -3' miRNA: 3'- gGUGCuUCAuucc---UCCGCGAaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 180494 | 0.66 | 0.996595 |
Target: 5'- -gGCGGAGgacGAGGAGGaCGCgg-GgGUa -3' miRNA: 3'- ggUGCUUCa--UUCCUCC-GCGaaaCgCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 108971 | 0.66 | 0.996595 |
Target: 5'- uCUGCGAgccgGGUGA-GAGGCGCcgguugGCGUa -3' miRNA: 3'- -GGUGCU----UCAUUcCUCCGCGaaa---CGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 35450 | 0.66 | 0.998546 |
Target: 5'- aCACGAGGU----GGGCGg-UUGUGCa -3' miRNA: 3'- gGUGCUUCAuuccUCCGCgaAACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 152507 | 0.66 | 0.998546 |
Target: 5'- gCCACGAAa-AAGGAucugauuaaugcGGCgacGCUcUGCGCg -3' miRNA: 3'- -GGUGCUUcaUUCCU------------CCG---CGAaACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 70091 | 0.66 | 0.998259 |
Target: 5'- gCACGGAcUGGcGGuGGCGC--UGCGUg -3' miRNA: 3'- gGUGCUUcAUU-CCuCCGCGaaACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 1252 | 0.66 | 0.997854 |
Target: 5'- -gAUGggGUgGAGGAGGUGCgcugagacggGCGa -3' miRNA: 3'- ggUGCuuCA-UUCCUCCGCGaaa-------CGCg -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 51880 | 0.66 | 0.997703 |
Target: 5'- cCCGCaGAcGGUAucgccggucugguccGGGAGGCauuUUUUGCGCu -3' miRNA: 3'- -GGUG-CU-UCAU---------------UCCUCCGc--GAAACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 202208 | 0.66 | 0.996595 |
Target: 5'- aCugGGAaUAuuGGGGGUGCagUUGCGUg -3' miRNA: 3'- gGugCUUcAUu-CCUCCGCGa-AACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 219781 | 0.66 | 0.998259 |
Target: 5'- gCCGCG-GGUggaacguccGAGGcGGGCGCguugugGCGUg -3' miRNA: 3'- -GGUGCuUCA---------UUCC-UCCGCGaaa---CGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 53395 | 0.66 | 0.998259 |
Target: 5'- aUACGGAGgaGGGGGGCuaUcaggggGUGCa -3' miRNA: 3'- gGUGCUUCauUCCUCCGcgAaa----CGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 220909 | 0.66 | 0.998259 |
Target: 5'- -gGCGGugagAGUGAGGAucGGgGCUggUGCGg -3' miRNA: 3'- ggUGCU----UCAUUCCU--CCgCGAa-ACGCg -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 112323 | 0.66 | 0.998546 |
Target: 5'- aCCACGgcGUcGGcGAccguGGUGCg--GCGCu -3' miRNA: 3'- -GGUGCuuCAuUC-CU----CCGCGaaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 85057 | 0.66 | 0.997543 |
Target: 5'- gUACGGuuGUGaAGGAcGaGCGCUaUGCGCc -3' miRNA: 3'- gGUGCUu-CAU-UCCU-C-CGCGAaACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 114881 | 0.66 | 0.997101 |
Target: 5'- cCCACGGAGacc--GGGUGCUc-GCGCa -3' miRNA: 3'- -GGUGCUUCauuccUCCGCGAaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 124124 | 0.67 | 0.994625 |
Target: 5'- -gAUGAAGaUGAuuuuGGuGGUGUUUUGCGCc -3' miRNA: 3'- ggUGCUUC-AUU----CCuCCGCGAAACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 84782 | 0.67 | 0.992862 |
Target: 5'- aCCGCaGAugagggccaGGUGAuGAGGCGCauaGCGCu -3' miRNA: 3'- -GGUG-CU---------UCAUUcCUCCGCGaaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 181274 | 0.67 | 0.992862 |
Target: 5'- aCGCGGAGggcGGGaGAGGCgGCUgcccUGgGCg -3' miRNA: 3'- gGUGCUUCa--UUC-CUCCG-CGAa---ACgCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 63848 | 0.67 | 0.996018 |
Target: 5'- aCAUGuccAGUAAguGGAGGuCGUUUUGCaGCc -3' miRNA: 3'- gGUGCu--UCAUU--CCUCC-GCGAAACG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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