miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29319 5' -51.2 NC_006150.1 + 1252 0.66 0.997854
Target:  5'- -gAUGggGUgGAGGAGGUGCgcugagacggGCGa -3'
miRNA:   3'- ggUGCuuCA-UUCCUCCGCGaaa-------CGCg -5'
29319 5' -51.2 NC_006150.1 + 1432 0.69 0.976218
Target:  5'- -aGCGAgaaaGGcGAGGAGGUGUug-GCGCa -3'
miRNA:   3'- ggUGCU----UCaUUCCUCCGCGaaaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 1673 0.74 0.860229
Target:  5'- -uGCGGAGUAGgagcGGAGGUGUUUgGCGUa -3'
miRNA:   3'- ggUGCUUCAUU----CCUCCGCGAAaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 1865 0.73 0.8959
Target:  5'- gUCugGggGUGGGGGGuuGCGUggaggUGUGCg -3'
miRNA:   3'- -GGugCuuCAUUCCUC--CGCGaa---ACGCG- -5'
29319 5' -51.2 NC_006150.1 + 35450 0.66 0.998546
Target:  5'- aCACGAGGU----GGGCGg-UUGUGCa -3'
miRNA:   3'- gGUGCUUCAuuccUCCGCgaAACGCG- -5'
29319 5' -51.2 NC_006150.1 + 47957 0.73 0.880178
Target:  5'- gCCGCGAGGUgugagccgguccucGAGGAGGaCGCg--GcCGCc -3'
miRNA:   3'- -GGUGCUUCA--------------UUCCUCC-GCGaaaC-GCG- -5'
29319 5' -51.2 NC_006150.1 + 51735 0.71 0.949748
Target:  5'- aCCAgGGAGgcaAAGGAGGacccugguuuCGCU-UGCGCu -3'
miRNA:   3'- -GGUgCUUCa--UUCCUCC----------GCGAaACGCG- -5'
29319 5' -51.2 NC_006150.1 + 51880 0.66 0.997703
Target:  5'- cCCGCaGAcGGUAucgccggucugguccGGGAGGCauuUUUUGCGCu -3'
miRNA:   3'- -GGUG-CU-UCAU---------------UCCUCCGc--GAAACGCG- -5'
29319 5' -51.2 NC_006150.1 + 53395 0.66 0.998259
Target:  5'- aUACGGAGgaGGGGGGCuaUcaggggGUGCa -3'
miRNA:   3'- gGUGCUUCauUCCUCCGcgAaa----CGCG- -5'
29319 5' -51.2 NC_006150.1 + 54463 0.68 0.991822
Target:  5'- -uGCucAGUGagGGGGGGCGCguguaUGUGCa -3'
miRNA:   3'- ggUGcuUCAU--UCCUCCGCGaa---ACGCG- -5'
29319 5' -51.2 NC_006150.1 + 57736 0.69 0.978605
Target:  5'- uCCGCGAA--AAGGAGGUucaucgGCccauagUGCGCa -3'
miRNA:   3'- -GGUGCUUcaUUCCUCCG------CGaa----ACGCG- -5'
29319 5' -51.2 NC_006150.1 + 63848 0.67 0.996018
Target:  5'- aCAUGuccAGUAAguGGAGGuCGUUUUGCaGCc -3'
miRNA:   3'- gGUGCu--UCAUU--CCUCC-GCGAAACG-CG- -5'
29319 5' -51.2 NC_006150.1 + 70091 0.66 0.998259
Target:  5'- gCACGGAcUGGcGGuGGCGC--UGCGUg -3'
miRNA:   3'- gGUGCUUcAUU-CCuCCGCGaaACGCG- -5'
29319 5' -51.2 NC_006150.1 + 70757 0.71 0.957675
Target:  5'- aCACGAAacGAGGAGGCccaccGCaugUGCGCc -3'
miRNA:   3'- gGUGCUUcaUUCCUCCG-----CGaa-ACGCG- -5'
29319 5' -51.2 NC_006150.1 + 70909 0.73 0.889212
Target:  5'- -gGCGGAGgcgGAGGAGGUGUgg-GCGg -3'
miRNA:   3'- ggUGCUUCa--UUCCUCCGCGaaaCGCg -5'
29319 5' -51.2 NC_006150.1 + 71045 0.69 0.975969
Target:  5'- gCCGCGuaucAGUGcggcgcaAGGGGuGCGCUcgcugGCGCa -3'
miRNA:   3'- -GGUGCu---UCAU-------UCCUC-CGCGAaa---CGCG- -5'
29319 5' -51.2 NC_006150.1 + 81857 0.74 0.844472
Target:  5'- uCCAgGAGGcgGAGGAGGCGCUgaGgGa -3'
miRNA:   3'- -GGUgCUUCa-UUCCUCCGCGAaaCgCg -5'
29319 5' -51.2 NC_006150.1 + 84782 0.67 0.992862
Target:  5'- aCCGCaGAugagggccaGGUGAuGAGGCGCauaGCGCu -3'
miRNA:   3'- -GGUG-CU---------UCAUUcCUCCGCGaaaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 85057 0.66 0.997543
Target:  5'- gUACGGuuGUGaAGGAcGaGCGCUaUGCGCc -3'
miRNA:   3'- gGUGCUu-CAU-UCCU-C-CGCGAaACGCG- -5'
29319 5' -51.2 NC_006150.1 + 86427 0.73 0.8959
Target:  5'- aCCGuCGAAG-GGGGcGGCGCgccagGCGCa -3'
miRNA:   3'- -GGU-GCUUCaUUCCuCCGCGaaa--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.