miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29319 5' -51.2 NC_006150.1 + 114881 0.66 0.997101
Target:  5'- cCCACGGAGacc--GGGUGCUc-GCGCa -3'
miRNA:   3'- -GGUGCUUCauuccUCCGCGAaaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 181274 0.67 0.992862
Target:  5'- aCGCGGAGggcGGGaGAGGCgGCUgcccUGgGCg -3'
miRNA:   3'- gGUGCUUCa--UUC-CUCCG-CGAa---ACgCG- -5'
29319 5' -51.2 NC_006150.1 + 84782 0.67 0.992862
Target:  5'- aCCGCaGAugagggccaGGUGAuGAGGCGCauaGCGCu -3'
miRNA:   3'- -GGUG-CU---------UCAUUcCUCCGCGaaaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 124124 0.67 0.994625
Target:  5'- -gAUGAAGaUGAuuuuGGuGGUGUUUUGCGCc -3'
miRNA:   3'- ggUGCUUC-AUU----CCuCCGCGAAACGCG- -5'
29319 5' -51.2 NC_006150.1 + 122738 0.67 0.995364
Target:  5'- -gACGAGGUGGGcGAGGacuGCUgggaaugcUGUGCg -3'
miRNA:   3'- ggUGCUUCAUUC-CUCCg--CGAa-------ACGCG- -5'
29319 5' -51.2 NC_006150.1 + 106280 0.67 0.995364
Target:  5'- gCCGCGggGggagagGAGGAGGaCGacgUUGUa- -3'
miRNA:   3'- -GGUGCuuCa-----UUCCUCC-GCga-AACGcg -5'
29319 5' -51.2 NC_006150.1 + 108971 0.66 0.996595
Target:  5'- uCUGCGAgccgGGUGA-GAGGCGCcgguugGCGUa -3'
miRNA:   3'- -GGUGCU----UCAUUcCUCCGCGaaa---CGCG- -5'
29319 5' -51.2 NC_006150.1 + 180494 0.66 0.996595
Target:  5'- -gGCGGAGgacGAGGAGGaCGCgg-GgGUa -3'
miRNA:   3'- ggUGCUUCa--UUCCUCC-GCGaaaCgCG- -5'
29319 5' -51.2 NC_006150.1 + 117621 0.66 0.996595
Target:  5'- gCACGuAGUucuugaaAGGCGCUggGCGCc -3'
miRNA:   3'- gGUGCuUCAuucc---UCCGCGAaaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 136493 0.68 0.991822
Target:  5'- aUACGAAGUAcuGuuucGGgGCUUUGCGg -3'
miRNA:   3'- gGUGCUUCAUucCu---CCgCGAAACGCg -5'
29319 5' -51.2 NC_006150.1 + 188910 0.68 0.991822
Target:  5'- --uCGggGUAacacGGGAuGGCGCac-GCGCa -3'
miRNA:   3'- gguGCuuCAU----UCCU-CCGCGaaaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 95438 0.68 0.990666
Target:  5'- uCCGUGAAGgauGGAccuGGCGCg--GCGCc -3'
miRNA:   3'- -GGUGCUUCauuCCU---CCGCGaaaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 202836 0.74 0.836299
Target:  5'- --gUGGAGgc-GGAGGCGCUUgaaGCGCg -3'
miRNA:   3'- gguGCUUCauuCCUCCGCGAAa--CGCG- -5'
29319 5' -51.2 NC_006150.1 + 139963 0.73 0.882297
Target:  5'- gCACGAAugAAGGccGCGCgUUGCGCa -3'
miRNA:   3'- gGUGCUUcaUUCCucCGCGaAACGCG- -5'
29319 5' -51.2 NC_006150.1 + 70909 0.73 0.889212
Target:  5'- -gGCGGAGgcgGAGGAGGUGUgg-GCGg -3'
miRNA:   3'- ggUGCUUCa--UUCCUCCGCGaaaCGCg -5'
29319 5' -51.2 NC_006150.1 + 88019 0.71 0.940889
Target:  5'- gCCugGggGaUGGGGcGGCGUUccgcugGCGCu -3'
miRNA:   3'- -GGugCuuC-AUUCCuCCGCGAaa----CGCG- -5'
29319 5' -51.2 NC_006150.1 + 51735 0.71 0.949748
Target:  5'- aCCAgGGAGgcaAAGGAGGacccugguuuCGCU-UGCGCu -3'
miRNA:   3'- -GGUgCUUCa--UUCCUCC----------GCGAaACGCG- -5'
29319 5' -51.2 NC_006150.1 + 70757 0.71 0.957675
Target:  5'- aCACGAAacGAGGAGGCccaccGCaugUGCGCc -3'
miRNA:   3'- gGUGCUUcaUUCCUCCG-----CGaa-ACGCG- -5'
29319 5' -51.2 NC_006150.1 + 88251 0.69 0.982842
Target:  5'- gCCGCGcagcccuGgcGGGGGGCGgagcgUGCGCu -3'
miRNA:   3'- -GGUGCuu-----CauUCCUCCGCgaa--ACGCG- -5'
29319 5' -51.2 NC_006150.1 + 91007 0.68 0.990666
Target:  5'- -gGCGggGcGAGGAGGgGUg--GCGg -3'
miRNA:   3'- ggUGCuuCaUUCCUCCgCGaaaCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.