miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29329 3' -51.1 NC_006150.1 + 150327 0.66 0.998759
Target:  5'- cCCgaGCACGUGCAccGCUGGaguuacuugUGUGCgCCu -3'
miRNA:   3'- -GGacUGUGCAUGU--CGACC---------ACAUGaGG- -5'
29329 3' -51.1 NC_006150.1 + 153212 0.66 0.998759
Target:  5'- --aGACGCGUugGGa-GGUGUACa-- -3'
miRNA:   3'- ggaCUGUGCAugUCgaCCACAUGagg -5'
29329 3' -51.1 NC_006150.1 + 85378 0.66 0.998613
Target:  5'- uUCUGGauucaGCcUACGGagcuucagacucuaUGGUGUACUCCg -3'
miRNA:   3'- -GGACUg----UGcAUGUCg-------------ACCACAUGAGG- -5'
29329 3' -51.1 NC_006150.1 + 25375 0.66 0.998509
Target:  5'- aCCUGACACGUACuGCgauaucaGGUucag-CCa -3'
miRNA:   3'- -GGACUGUGCAUGuCGa------CCAcaugaGG- -5'
29329 3' -51.1 NC_006150.1 + 166986 0.66 0.998509
Target:  5'- -gUGAaaaACGUAaaGGCUGGUGU-UUCCa -3'
miRNA:   3'- ggACUg--UGCAUg-UCGACCACAuGAGG- -5'
29329 3' -51.1 NC_006150.1 + 146167 0.66 0.998482
Target:  5'- aCCUGugGCGUcucauucucuguuGCAGCggcGGUcgGUGCUg- -3'
miRNA:   3'- -GGACugUGCA-------------UGUCGa--CCA--CAUGAgg -5'
29329 3' -51.1 NC_006150.1 + 90939 0.66 0.998218
Target:  5'- aCCgGugGCGccgACAGCaUGauGUGUGCUCa -3'
miRNA:   3'- -GGaCugUGCa--UGUCG-AC--CACAUGAGg -5'
29329 3' -51.1 NC_006150.1 + 124777 0.66 0.998218
Target:  5'- aCCUG-UGCGaccucgGgAGCgGGUGUGCUCUc -3'
miRNA:   3'- -GGACuGUGCa-----UgUCGaCCACAUGAGG- -5'
29329 3' -51.1 NC_006150.1 + 156445 0.66 0.998218
Target:  5'- uUCUGcaggauACACGUuaGGCaUGGUGUGUUCCa -3'
miRNA:   3'- -GGAC------UGUGCAugUCG-ACCACAUGAGG- -5'
29329 3' -51.1 NC_006150.1 + 125354 0.66 0.998218
Target:  5'- --aGAC-CGUGCGGUacGUGUACUaCCg -3'
miRNA:   3'- ggaCUGuGCAUGUCGacCACAUGA-GG- -5'
29329 3' -51.1 NC_006150.1 + 80320 0.66 0.99788
Target:  5'- aCUGGCAC-UGCAuCUGGUGccguaacaccUACUUCg -3'
miRNA:   3'- gGACUGUGcAUGUcGACCAC----------AUGAGG- -5'
29329 3' -51.1 NC_006150.1 + 49923 0.66 0.99788
Target:  5'- uUCUGuCGCGUugGGUgcuuucauuuUGGUG-GCUCUg -3'
miRNA:   3'- -GGACuGUGCAugUCG----------ACCACaUGAGG- -5'
29329 3' -51.1 NC_006150.1 + 145237 0.67 0.996531
Target:  5'- gUCUGGC-CGUGCuGCUGGgcauCUCa -3'
miRNA:   3'- -GGACUGuGCAUGuCGACCacauGAGg -5'
29329 3' -51.1 NC_006150.1 + 102282 0.67 0.995289
Target:  5'- uCCUGACACG-GCGGC-GGaucgACUUCg -3'
miRNA:   3'- -GGACUGUGCaUGUCGaCCaca-UGAGG- -5'
29329 3' -51.1 NC_006150.1 + 40421 0.67 0.995218
Target:  5'- --aGGCACGUGCGccuccauGgUGGUGUAUcCCg -3'
miRNA:   3'- ggaCUGUGCAUGU-------CgACCACAUGaGG- -5'
29329 3' -51.1 NC_006150.1 + 147202 0.67 0.994544
Target:  5'- gUUGGCAUGUACuggcaaaacgccAGCuUGGaUGUACUUCu -3'
miRNA:   3'- gGACUGUGCAUG------------UCG-ACC-ACAUGAGG- -5'
29329 3' -51.1 NC_006150.1 + 216591 0.68 0.993706
Target:  5'- aCCUGGCGgGgucucaUGGUGUACUCg -3'
miRNA:   3'- -GGACUGUgCaugucgACCACAUGAGg -5'
29329 3' -51.1 NC_006150.1 + 97190 0.68 0.993617
Target:  5'- gCCUGuccgagaGCACGUugAGCau-UGUGCUCUg -3'
miRNA:   3'- -GGAC-------UGUGCAugUCGaccACAUGAGG- -5'
29329 3' -51.1 NC_006150.1 + 184661 0.68 0.992769
Target:  5'- -gUGGCAUGUAU-GUUGGUGUACg-- -3'
miRNA:   3'- ggACUGUGCAUGuCGACCACAUGagg -5'
29329 3' -51.1 NC_006150.1 + 32730 0.68 0.992769
Target:  5'- cCCUGGC-CucGCGGCUGGUaccugGUGCUgCa -3'
miRNA:   3'- -GGACUGuGcaUGUCGACCA-----CAUGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.