miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29348 3' -45.7 NC_006150.1 + 196168 1.15 0.018197
Target:  5'- aGCUAACCAACCAUAAACUGACCACACg -3'
miRNA:   3'- -CGAUUGGUUGGUAUUUGACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 218867 0.79 0.890183
Target:  5'- cGCUAACUAucuucACCGaGAACUGACCAC-Cg -3'
miRNA:   3'- -CGAUUGGU-----UGGUaUUUGACUGGUGuG- -5'
29348 3' -45.7 NC_006150.1 + 180248 0.77 0.956442
Target:  5'- uGCUGGCCAaguaacgauccacACCAUGAAUUG-UCGCACu -3'
miRNA:   3'- -CGAUUGGU-------------UGGUAUUUGACuGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 116029 0.76 0.967695
Target:  5'- aCUGACgCGGCCAUcaAAACUcuguacGACCACACa -3'
miRNA:   3'- cGAUUG-GUUGGUA--UUUGA------CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 196455 0.75 0.976456
Target:  5'- aCUAACCAACCAUGugauCUGGCUgaauCGCa -3'
miRNA:   3'- cGAUUGGUUGGUAUuu--GACUGGu---GUG- -5'
29348 3' -45.7 NC_006150.1 + 217184 0.73 0.993457
Target:  5'- uGCUGuuGCUAGCCGUGc-CUGACC-CGCg -3'
miRNA:   3'- -CGAU--UGGUUGGUAUuuGACUGGuGUG- -5'
29348 3' -45.7 NC_006150.1 + 211637 0.72 0.996506
Target:  5'- -aUAGCgCGcCCGUAAACgagGGCCACACc -3'
miRNA:   3'- cgAUUG-GUuGGUAUUUGa--CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 168662 0.72 0.997049
Target:  5'- gGCUAGCCAACuCGUccACUGcuuCUGCGCa -3'
miRNA:   3'- -CGAUUGGUUG-GUAuuUGACu--GGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 161957 0.71 0.998826
Target:  5'- uCUGgacACCGGCCAaaacaauauGGCUGACCugGCa -3'
miRNA:   3'- cGAU---UGGUUGGUau-------UUGACUGGugUG- -5'
29348 3' -45.7 NC_006150.1 + 191844 0.71 0.99922
Target:  5'- uCUGACCAGCCAcacgAAAC--GCCGCAUc -3'
miRNA:   3'- cGAUUGGUUGGUa---UUUGacUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 84648 0.71 0.99922
Target:  5'- uCUAAUCGcaguGCCAguucGAGCgugGACCGCACg -3'
miRNA:   3'- cGAUUGGU----UGGUa---UUUGa--CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 219382 0.7 0.999356
Target:  5'- aCUGGCCAaaucacgggggccACCAgagGGACgUGGCCACAg -3'
miRNA:   3'- cGAUUGGU-------------UGGUa--UUUG-ACUGGUGUg -5'
29348 3' -45.7 NC_006150.1 + 129668 0.7 0.999597
Target:  5'- cGCgGACCuGCCu---GCUGugCGCGCu -3'
miRNA:   3'- -CGaUUGGuUGGuauuUGACugGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 88738 0.7 0.999597
Target:  5'- uGCUAcuGCCAccACCGUGGACguugGACgGCGu -3'
miRNA:   3'- -CGAU--UGGU--UGGUAUUUGa---CUGgUGUg -5'
29348 3' -45.7 NC_006150.1 + 156360 0.7 0.999597
Target:  5'- cUUGGCCAACC-UGAGCaUGGCCAUu- -3'
miRNA:   3'- cGAUUGGUUGGuAUUUG-ACUGGUGug -5'
29348 3' -45.7 NC_006150.1 + 208762 0.7 0.999673
Target:  5'- gGC-AACCAGCCAgacAGACaggccuaUGACCugACu -3'
miRNA:   3'- -CGaUUGGUUGGUa--UUUG-------ACUGGugUG- -5'
29348 3' -45.7 NC_006150.1 + 192057 0.7 0.99968
Target:  5'- --cGGCCAugGCCAUccAGCUGGCCAuCACc -3'
miRNA:   3'- cgaUUGGU--UGGUAu-UUGACUGGU-GUG- -5'
29348 3' -45.7 NC_006150.1 + 72297 0.7 0.99968
Target:  5'- uGC-GACCuaGACUcgGAACUGGCCACu- -3'
miRNA:   3'- -CGaUUGG--UUGGuaUUUGACUGGUGug -5'
29348 3' -45.7 NC_006150.1 + 3096 0.7 0.99968
Target:  5'- cGCUucCCAuuCCAUAGuguucacgaacGCUcGACCGCACg -3'
miRNA:   3'- -CGAuuGGUu-GGUAUU-----------UGA-CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 182834 0.7 0.999749
Target:  5'- cCUcuCCAACCAUGgcaGACUcGACCAC-Cg -3'
miRNA:   3'- cGAuuGGUUGGUAU---UUGA-CUGGUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.