miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29348 3' -45.7 NC_006150.1 + 209683 0.67 0.999985
Target:  5'- gGUUAACUAugCAcUGGACU--CCACACa -3'
miRNA:   3'- -CGAUUGGUugGU-AUUUGAcuGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 65199 0.69 0.999911
Target:  5'- aGCUAGcCCGACCc-GAACUGAgCGC-Ca -3'
miRNA:   3'- -CGAUU-GGUUGGuaUUUGACUgGUGuG- -5'
29348 3' -45.7 NC_006150.1 + 149832 0.69 0.999911
Target:  5'- gGCUGGCCGcgaaccACCGUGAacACUGugUugagcagcaGCACg -3'
miRNA:   3'- -CGAUUGGU------UGGUAUU--UGACugG---------UGUG- -5'
29348 3' -45.7 NC_006150.1 + 214440 0.68 0.99994
Target:  5'- uGCUAAcCCGACCGUGGuACaucgauaucuggugGAUCACGCu -3'
miRNA:   3'- -CGAUU-GGUUGGUAUU-UGa-------------CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 215843 0.68 0.999949
Target:  5'- aGCUGACgccccaCAGCCAUc----GACCGCACg -3'
miRNA:   3'- -CGAUUG------GUUGGUAuuugaCUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 60417 0.68 0.999949
Target:  5'- uGCUAACCAcauuAUCGguu-CUGAaCCACAUg -3'
miRNA:   3'- -CGAUUGGU----UGGUauuuGACU-GGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 199556 0.68 0.999972
Target:  5'- -aUAGCCuAGCCAaauUAAGCUGGCaauCGCg -3'
miRNA:   3'- cgAUUGG-UUGGU---AUUUGACUGgu-GUG- -5'
29348 3' -45.7 NC_006150.1 + 182540 0.68 0.999972
Target:  5'- -aUGugCAAUCucau-CUGGCCGCACg -3'
miRNA:   3'- cgAUugGUUGGuauuuGACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 194542 0.68 0.99998
Target:  5'- cGCUG--UAGCCAaGAgauACUGGCUACACu -3'
miRNA:   3'- -CGAUugGUUGGUaUU---UGACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 169788 0.69 0.999883
Target:  5'- aGCUcauAACC-ACCAUAuuCUGAuugacagaaCCGCGCg -3'
miRNA:   3'- -CGA---UUGGuUGGUAUuuGACU---------GGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 217173 0.69 0.999804
Target:  5'- cGCUuugaaaCAAUCAUGAACaGACCGCGg -3'
miRNA:   3'- -CGAuug---GUUGGUAUUUGaCUGGUGUg -5'
29348 3' -45.7 NC_006150.1 + 182834 0.7 0.999749
Target:  5'- cCUcuCCAACCAUGgcaGACUcGACCAC-Cg -3'
miRNA:   3'- cGAuuGGUUGGUAU---UUGA-CUGGUGuG- -5'
29348 3' -45.7 NC_006150.1 + 180248 0.77 0.956442
Target:  5'- uGCUGGCCAaguaacgauccacACCAUGAAUUG-UCGCACu -3'
miRNA:   3'- -CGAUUGGU-------------UGGUAUUUGACuGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 161957 0.71 0.998826
Target:  5'- uCUGgacACCGGCCAaaacaauauGGCUGACCugGCa -3'
miRNA:   3'- cGAU---UGGUUGGUau-------UUGACUGGugUG- -5'
29348 3' -45.7 NC_006150.1 + 191844 0.71 0.99922
Target:  5'- uCUGACCAGCCAcacgAAAC--GCCGCAUc -3'
miRNA:   3'- cGAUUGGUUGGUa---UUUGacUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 219382 0.7 0.999356
Target:  5'- aCUGGCCAaaucacgggggccACCAgagGGACgUGGCCACAg -3'
miRNA:   3'- cGAUUGGU-------------UGGUa--UUUG-ACUGGUGUg -5'
29348 3' -45.7 NC_006150.1 + 88738 0.7 0.999597
Target:  5'- uGCUAcuGCCAccACCGUGGACguugGACgGCGu -3'
miRNA:   3'- -CGAU--UGGU--UGGUAUUUGa---CUGgUGUg -5'
29348 3' -45.7 NC_006150.1 + 129668 0.7 0.999597
Target:  5'- cGCgGACCuGCCu---GCUGugCGCGCu -3'
miRNA:   3'- -CGaUUGGuUGGuauuUGACugGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 3096 0.7 0.99968
Target:  5'- cGCUucCCAuuCCAUAGuguucacgaacGCUcGACCGCACg -3'
miRNA:   3'- -CGAuuGGUu-GGUAUU-----------UGA-CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 72297 0.7 0.99968
Target:  5'- uGC-GACCuaGACUcgGAACUGGCCACu- -3'
miRNA:   3'- -CGaUUGG--UUGGuaUUUGACUGGUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.