miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29348 3' -45.7 NC_006150.1 + 1317 0.66 0.999999
Target:  5'- aGCUccagauGCCGACCuc--ACUGACUACuCa -3'
miRNA:   3'- -CGAu-----UGGUUGGuauuUGACUGGUGuG- -5'
29348 3' -45.7 NC_006150.1 + 3096 0.7 0.99968
Target:  5'- cGCUucCCAuuCCAUAGuguucacgaacGCUcGACCGCACg -3'
miRNA:   3'- -CGAuuGGUu-GGUAUU-----------UGA-CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 19636 0.68 0.999932
Target:  5'- uGCUGACUuucauAACUAccuGGCUGGCCACu- -3'
miRNA:   3'- -CGAUUGG-----UUGGUau-UUGACUGGUGug -5'
29348 3' -45.7 NC_006150.1 + 30545 0.66 0.999998
Target:  5'- --gAGCCGGCgCAUGAAaggacaUGACgACGCa -3'
miRNA:   3'- cgaUUGGUUG-GUAUUUg-----ACUGgUGUG- -5'
29348 3' -45.7 NC_006150.1 + 35484 0.66 0.999997
Target:  5'- aGCUucACCGGCUGUAugUUcgucguuuucGACCACACg -3'
miRNA:   3'- -CGAu-UGGUUGGUAUuuGA----------CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 35924 0.67 0.999989
Target:  5'- -gUGACaguCCGUAAAgccgagguccCUGGCCACACu -3'
miRNA:   3'- cgAUUGguuGGUAUUU----------GACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 39012 0.66 0.999998
Target:  5'- aGCgGGCCAGCCc--AAC-GACaCACACg -3'
miRNA:   3'- -CGaUUGGUUGGuauUUGaCUG-GUGUG- -5'
29348 3' -45.7 NC_006150.1 + 55374 0.67 0.999995
Target:  5'- cUUAAUgAGCUc---GCUGACCACACu -3'
miRNA:   3'- cGAUUGgUUGGuauuUGACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 55833 0.66 0.999999
Target:  5'- cGCUuuCCucuCCAUAu-CUGuuaACCGCACg -3'
miRNA:   3'- -CGAuuGGuu-GGUAUuuGAC---UGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 58590 0.67 0.999985
Target:  5'- ---uGCCGGCCAUGAacACUGugCAgcUACu -3'
miRNA:   3'- cgauUGGUUGGUAUU--UGACugGU--GUG- -5'
29348 3' -45.7 NC_006150.1 + 60417 0.68 0.999949
Target:  5'- uGCUAACCAcauuAUCGguu-CUGAaCCACAUg -3'
miRNA:   3'- -CGAUUGGU----UGGUauuuGACU-GGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 65199 0.69 0.999911
Target:  5'- aGCUAGcCCGACCc-GAACUGAgCGC-Ca -3'
miRNA:   3'- -CGAUU-GGUUGGuaUUUGACUgGUGuG- -5'
29348 3' -45.7 NC_006150.1 + 72297 0.7 0.99968
Target:  5'- uGC-GACCuaGACUcgGAACUGGCCACu- -3'
miRNA:   3'- -CGaUUGG--UUGGuaUUUGACUGGUGug -5'
29348 3' -45.7 NC_006150.1 + 84648 0.71 0.99922
Target:  5'- uCUAAUCGcaguGCCAguucGAGCgugGACCGCACg -3'
miRNA:   3'- cGAUUGGU----UGGUa---UUUGa--CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 86184 0.66 0.999999
Target:  5'- cGCUGugCGACCGUucGACgccaguggUGAUUGCGCc -3'
miRNA:   3'- -CGAUugGUUGGUAu-UUG--------ACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 88221 0.66 0.999999
Target:  5'- gGCgUAGCCAugcgcguucuCCAggGAGC-GGCCGCGCa -3'
miRNA:   3'- -CG-AUUGGUu---------GGUa-UUUGaCUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 88615 0.69 0.999848
Target:  5'- --cGGCCAACCcgGg---GACCGCACa -3'
miRNA:   3'- cgaUUGGUUGGuaUuugaCUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 88738 0.7 0.999597
Target:  5'- uGCUAcuGCCAccACCGUGGACguugGACgGCGu -3'
miRNA:   3'- -CGAU--UGGU--UGGUAUUUGa---CUGgUGUg -5'
29348 3' -45.7 NC_006150.1 + 98025 0.68 0.99998
Target:  5'- aGCgucAAUCAGCC-UGGGCUaACCAUACa -3'
miRNA:   3'- -CGa--UUGGUUGGuAUUUGAcUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 99577 0.66 0.999999
Target:  5'- cGCU-GCCAGCaCAUGGACUguaaaGAUCGCu- -3'
miRNA:   3'- -CGAuUGGUUG-GUAUUUGA-----CUGGUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.