miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2935 5' -59.4 NC_001493.1 + 63117 1.1 0.001296
Target:  5'- gGGCGACCGGCACCGUGACCACCACGAc -3'
miRNA:   3'- -CCGCUGGCCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62955 1.1 0.001296
Target:  5'- gGGCGACCGGCACCGUGACCACCACGAc -3'
miRNA:   3'- -CCGCUGGCCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62871 1.1 0.001296
Target:  5'- gGGCGACCGGCACCGUGACCACCACGAc -3'
miRNA:   3'- -CCGCUGGCCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63038 1.03 0.004141
Target:  5'- aGCGACCGGUACCGUGACCACCACGAc -3'
miRNA:   3'- cCGCUGGCCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62996 0.95 0.013546
Target:  5'- aGCGACCGGCACCGUGACCGUCGCGAc -3'
miRNA:   3'- cCGCUGGCCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62928 0.89 0.034439
Target:  5'- cGGCGaaGCCcacgggagccaacGGCACCGUGACCACCACGAc -3'
miRNA:   3'- -CCGC--UGG-------------CCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62844 0.89 0.034439
Target:  5'- cGGCGaaGCCcacgggagccaacGGCACCGUGACCACCACGAc -3'
miRNA:   3'- -CCGC--UGG-------------CCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62760 0.89 0.034439
Target:  5'- cGGCGaaGCCcgcgggagccaacGGCACCGUGACCACCACGAc -3'
miRNA:   3'- -CCGC--UGG-------------CCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62802 0.89 0.034439
Target:  5'- cGGCGaaGCCcgcgggagccaacGGCACCGUGACCACCACGAc -3'
miRNA:   3'- -CCGC--UGG-------------CCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62718 0.89 0.034439
Target:  5'- cGGCGaaGCCcgcgggagccaacGGCACCGUGACCACCACGAc -3'
miRNA:   3'- -CCGC--UGG-------------CCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62676 0.89 0.034439
Target:  5'- cGGCGaaGCCcgcgggagccaacGGCACCGUGACCACCACGAc -3'
miRNA:   3'- -CCGC--UGG-------------CCGUGGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63161 0.81 0.130257
Target:  5'- aGCGACCGaCACCGUgguGACUACCGCGAc -3'
miRNA:   3'- cCGCUGGCcGUGGCA---CUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63793 0.8 0.136977
Target:  5'- cGCGAaCGGCACCGcggUGACCACCACa- -3'
miRNA:   3'- cCGCUgGCCGUGGC---ACUGGUGGUGcu -5'
2935 5' -59.4 NC_001493.1 + 63287 0.8 0.136977
Target:  5'- aGCGAaCGGCACCGUgguGACCACCACa- -3'
miRNA:   3'- cCGCUgGCCGUGGCA---CUGGUGGUGcu -5'
2935 5' -59.4 NC_001493.1 + 63332 0.8 0.151378
Target:  5'- aGCGACCGaCACCGUgguGACCACCACa- -3'
miRNA:   3'- cCGCUGGCcGUGGCA---CUGGUGGUGcu -5'
2935 5' -59.4 NC_001493.1 + 63421 0.8 0.151378
Target:  5'- aGCGACCGaCACCGUgguGACCACCACa- -3'
miRNA:   3'- cCGCUGGCcGUGGCA---CUGGUGGUGcu -5'
2935 5' -59.4 NC_001493.1 + 63547 0.8 0.151378
Target:  5'- aGCGACCGaCACCGUgguGACCACCACa- -3'
miRNA:   3'- cCGCUGGCcGUGGCA---CUGGUGGUGcu -5'
2935 5' -59.4 NC_001493.1 + 63670 0.8 0.151378
Target:  5'- aGCGACCGaCACCGUgguGACCACCACa- -3'
miRNA:   3'- cCGCUGGCcGUGGCA---CUGGUGGUGcu -5'
2935 5' -59.4 NC_001493.1 + 63376 0.79 0.155188
Target:  5'- aGCGACC-GCACCGUgguGACCACCACa- -3'
miRNA:   3'- cCGCUGGcCGUGGCA---CUGGUGGUGcu -5'
2935 5' -59.4 NC_001493.1 + 63069 0.78 0.193547
Target:  5'- gGGCGucGCCGGUGCgGUGGUCACCACGGu -3'
miRNA:   3'- -CCGC--UGGCCGUGgCACUGGUGGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.