miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2935 5' -59.4 NC_001493.1 + 4027 0.7 0.54415
Target:  5'- cGGUGACCGGCAucCCGaaaaUGAUCcacguguGCCugGAc -3'
miRNA:   3'- -CCGCUGGCCGU--GGC----ACUGG-------UGGugCU- -5'
2935 5' -59.4 NC_001493.1 + 4176 0.66 0.78748
Target:  5'- gGGauGCCGGuCACCGUGcucuCCACCuGCa- -3'
miRNA:   3'- -CCgcUGGCC-GUGGCACu---GGUGG-UGcu -5'
2935 5' -59.4 NC_001493.1 + 5323 0.68 0.633872
Target:  5'- uGGCGggggcACCcgugGGCACCGUGACCGgaaacucucCCugGu -3'
miRNA:   3'- -CCGC-----UGG----CCGUGGCACUGGU---------GGugCu -5'
2935 5' -59.4 NC_001493.1 + 9135 0.67 0.731999
Target:  5'- cGCGACCGcGCucCCGggGAUgGCgGCGAg -3'
miRNA:   3'- cCGCUGGC-CGu-GGCa-CUGgUGgUGCU- -5'
2935 5' -59.4 NC_001493.1 + 9655 0.68 0.683439
Target:  5'- cGCGugCGGCaguugaguggucGCCGUGAUUGCUGuCGAa -3'
miRNA:   3'- cCGCugGCCG------------UGGCACUGGUGGU-GCU- -5'
2935 5' -59.4 NC_001493.1 + 10866 0.74 0.330119
Target:  5'- cGGCGAUCGGUgACCGcGGCCGguUCGCGAu -3'
miRNA:   3'- -CCGCUGGCCG-UGGCaCUGGU--GGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 12814 0.66 0.769426
Target:  5'- uGGUGACCGGaC-CCGUccGGCC-CCGUGAc -3'
miRNA:   3'- -CCGCUGGCC-GuGGCA--CUGGuGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 13201 0.68 0.663677
Target:  5'- gGGCGAccCCGGCgaacACCaggGAggUCACCACGAg -3'
miRNA:   3'- -CCGCU--GGCCG----UGGca-CU--GGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 14812 0.67 0.731999
Target:  5'- cGGgGGCUGGCA-CGUGgaGCC-CCGCGu -3'
miRNA:   3'- -CCgCUGGCCGUgGCAC--UGGuGGUGCu -5'
2935 5' -59.4 NC_001493.1 + 15921 0.68 0.673573
Target:  5'- aGGCcuCUGGUAUCGUGACCGaagagggacuCCugGAu -3'
miRNA:   3'- -CCGcuGGCCGUGGCACUGGU----------GGugCU- -5'
2935 5' -59.4 NC_001493.1 + 18221 0.67 0.703041
Target:  5'- cGGCGGCacccaGGC-CCccGACCGCC-CGGg -3'
miRNA:   3'- -CCGCUGg----CCGuGGcaCUGGUGGuGCU- -5'
2935 5' -59.4 NC_001493.1 + 20275 0.71 0.485382
Target:  5'- gGGuCGugCGGCGCCaGUGACCcguucuccuccaucACCGcCGAc -3'
miRNA:   3'- -CC-GCugGCCGUGG-CACUGG--------------UGGU-GCU- -5'
2935 5' -59.4 NC_001493.1 + 20586 0.67 0.741499
Target:  5'- cGCGACCGGCGCa-UGAaggaacucggggUCACCugGc -3'
miRNA:   3'- cCGCUGGCCGUGgcACU------------GGUGGugCu -5'
2935 5' -59.4 NC_001493.1 + 21064 0.66 0.750909
Target:  5'- cGGCGGguacgcuccCgCGGCACCGggGAUCcCCAUGGa -3'
miRNA:   3'- -CCGCU---------G-GCCGUGGCa-CUGGuGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 23300 0.66 0.769426
Target:  5'- aGGUguuGAUCGGCGCCcucgauGCCGCCAgGAu -3'
miRNA:   3'- -CCG---CUGGCCGUGGcac---UGGUGGUgCU- -5'
2935 5' -59.4 NC_001493.1 + 23462 0.7 0.554835
Target:  5'- uGGCGGCaucgaGGCGCCGaucaaCACCugGAc -3'
miRNA:   3'- -CCGCUGg----CCGUGGCacug-GUGGugCU- -5'
2935 5' -59.4 NC_001493.1 + 24698 0.69 0.613983
Target:  5'- cGUGACCgcuacGGUGCCGUGACa--CACGAu -3'
miRNA:   3'- cCGCUGG-----CCGUGGCACUGgugGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 28365 0.66 0.769426
Target:  5'- cGCGACCGGgguggccgaucuaCAgCGUGAaaacgcggaacuacaCGCCGCGAu -3'
miRNA:   3'- cCGCUGGCC-------------GUgGCACUg--------------GUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 29761 0.73 0.383779
Target:  5'- cGCGaACCuGCACCGUGACCucagggUCGCGAc -3'
miRNA:   3'- cCGC-UGGcCGUGGCACUGGu-----GGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 30187 0.67 0.741499
Target:  5'- cGCGGCgGaGCgaGCCGUGAUCAUCgAUGAg -3'
miRNA:   3'- cCGCUGgC-CG--UGGCACUGGUGG-UGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.