miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2935 5' -59.4 NC_001493.1 + 107772 0.67 0.712761
Target:  5'- cGgGugCGGgggugaCACCGUGcUCGCCGCGAu -3'
miRNA:   3'- cCgCugGCC------GUGGCACuGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 5323 0.68 0.633872
Target:  5'- uGGCGggggcACCcgugGGCACCGUGACCGgaaacucucCCugGu -3'
miRNA:   3'- -CCGC-----UGG----CCGUGGCACUGGU---------GGugCu -5'
2935 5' -59.4 NC_001493.1 + 120877 0.68 0.633872
Target:  5'- uGGCGggggcACCcgugGGCACCGUGACCGgaaacucucCCugGu -3'
miRNA:   3'- -CCGC-----UGG----CCGUGGCACUGGU---------GGugCu -5'
2935 5' -59.4 NC_001493.1 + 111040 0.68 0.673573
Target:  5'- cGGCGACCGaaGuuGaUGACCACCGu-- -3'
miRNA:   3'- -CCGCUGGCcgUggC-ACUGGUGGUgcu -5'
2935 5' -59.4 NC_001493.1 + 62505 0.68 0.683439
Target:  5'- uGGUGGuCaCGGUGCCGuUGGCUcCCGCGGg -3'
miRNA:   3'- -CCGCU-G-GCCGUGGC-ACUGGuGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62547 0.68 0.683439
Target:  5'- uGGUGGuCaCGGUGCCGuUGGCUcCCGCGGg -3'
miRNA:   3'- -CCGCU-G-GCCGUGGC-ACUGGuGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62589 0.68 0.683439
Target:  5'- uGGUGGuCaCGGUGCCGuUGGCUcCCGCGGg -3'
miRNA:   3'- -CCGCU-G-GCCGUGGC-ACUGGuGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 62631 0.68 0.683439
Target:  5'- uGGUGGuCaCGGUGCCGuUGGCUcCCGCGGg -3'
miRNA:   3'- -CCGCU-G-GCCGUGGC-ACUGGuGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 128509 0.67 0.703041
Target:  5'- gGGCG-CUGGCcgccGCCGaGAUCGCCAuCGGu -3'
miRNA:   3'- -CCGCuGGCCG----UGGCaCUGGUGGU-GCU- -5'
2935 5' -59.4 NC_001493.1 + 111748 0.69 0.594146
Target:  5'- -uUGuAUCGGaCAcCCGUGAUCACCACGGg -3'
miRNA:   3'- ccGC-UGGCC-GU-GGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63735 0.7 0.554835
Target:  5'- gGGCGucGCCGGUGUgGUGGUCACCGCGGu -3'
miRNA:   3'- -CCGC--UGGCCGUGgCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 119582 0.7 0.54415
Target:  5'- cGGUGACCGGCAucCCGaaaaUGAUCcacguguGCCugGAc -3'
miRNA:   3'- -CCGCUGGCCGU--GGC----ACUGG-------UGGugCU- -5'
2935 5' -59.4 NC_001493.1 + 81514 0.75 0.294636
Target:  5'- cGCGuACUccgucagGGCGuCCGUGACCAUCACGAg -3'
miRNA:   3'- cCGC-UGG-------CCGU-GGCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 106342 0.74 0.329394
Target:  5'- cGGCGGCCGccauggcGUGCCG-GGCCACCGCc- -3'
miRNA:   3'- -CCGCUGGC-------CGUGGCaCUGGUGGUGcu -5'
2935 5' -59.4 NC_001493.1 + 39166 0.74 0.34487
Target:  5'- aGCGACCGGUACCGcggucaacGACUacgACCAUGAc -3'
miRNA:   3'- cCGCUGGCCGUGGCa-------CUGG---UGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 95905 0.74 0.35242
Target:  5'- cGGUGGCCGGCGguCCGcucGACUACUACGc -3'
miRNA:   3'- -CCGCUGGCCGU--GGCa--CUGGUGGUGCu -5'
2935 5' -59.4 NC_001493.1 + 92261 0.71 0.460739
Target:  5'- gGGUGACCGGUGCCaaGAUC-UCACGAg -3'
miRNA:   3'- -CCGCUGGCCGUGGcaCUGGuGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 20275 0.71 0.485382
Target:  5'- gGGuCGugCGGCGCCaGUGACCcguucuccuccaucACCGcCGAc -3'
miRNA:   3'- -CC-GCugGCCGUGG-CACUGG--------------UGGU-GCU- -5'
2935 5' -59.4 NC_001493.1 + 64741 0.7 0.535458
Target:  5'- cGCGACCGGC-CCGuUGGCC-CCGu-- -3'
miRNA:   3'- cCGCUGGCCGuGGC-ACUGGuGGUgcu -5'
2935 5' -59.4 NC_001493.1 + 4027 0.7 0.54415
Target:  5'- cGGUGACCGGCAucCCGaaaaUGAUCcacguguGCCugGAc -3'
miRNA:   3'- -CCGCUGGCCGU--GGC----ACUGG-------UGGugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.