miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29350 5' -54.4 NC_006150.1 + 32911 0.66 0.976737
Target:  5'- aGCggagGCGGAGCGCggucGGCGGCGg-- -3'
miRNA:   3'- aCGaca-UGCUUCGCGa---CUGCUGCgag -5'
29350 5' -54.4 NC_006150.1 + 107525 0.66 0.971526
Target:  5'- aGCaGgcccgaGAAGCGCcGGCGGCGCa- -3'
miRNA:   3'- aCGaCaug---CUUCGCGaCUGCUGCGag -5'
29350 5' -54.4 NC_006150.1 + 33265 0.66 0.971526
Target:  5'- cUGCUGauggcacugauUACuGGuuCGCUGGCGACGCa- -3'
miRNA:   3'- -ACGAC-----------AUG-CUucGCGACUGCUGCGag -5'
29350 5' -54.4 NC_006150.1 + 1483 0.66 0.968626
Target:  5'- cGCUGUGCGGguaggaagauGGUGCaGGCG-CGC-Ca -3'
miRNA:   3'- aCGACAUGCU----------UCGCGaCUGCuGCGaG- -5'
29350 5' -54.4 NC_006150.1 + 124848 0.66 0.968626
Target:  5'- cUGgUGUAUGAAGCuCUGuACccgGugGCUCg -3'
miRNA:   3'- -ACgACAUGCUUCGcGAC-UG---CugCGAG- -5'
29350 5' -54.4 NC_006150.1 + 119481 0.67 0.96221
Target:  5'- aGUUGU-CGuc-CGUUGAgGACGCUCg -3'
miRNA:   3'- aCGACAuGCuucGCGACUgCUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 12819 0.67 0.96221
Target:  5'- cGgUGUAUGcAGCGUgGACGGCcggGCUCu -3'
miRNA:   3'- aCgACAUGCuUCGCGaCUGCUG---CGAG- -5'
29350 5' -54.4 NC_006150.1 + 119520 0.67 0.957581
Target:  5'- aGCcgGUggacGCGGAGCGCguucgcggcgucuuUGGCG-CGCUCu -3'
miRNA:   3'- aCGa-CA----UGCUUCGCG--------------ACUGCuGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 85660 0.67 0.950962
Target:  5'- cGCcGUACacAGCGCcgccagaucgGugGGCGCUCg -3'
miRNA:   3'- aCGaCAUGcuUCGCGa---------CugCUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 152040 0.68 0.942334
Target:  5'- gUGCUGguauugccUGCGGugguGCuGCUGGCcuuGGCGCUCg -3'
miRNA:   3'- -ACGAC--------AUGCUu---CG-CGACUG---CUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 109190 0.68 0.942334
Target:  5'- gGCUGUguugcgugcagACGAGGCGCagGAUuuggcaggugaGGCGUUCg -3'
miRNA:   3'- aCGACA-----------UGCUUCGCGa-CUG-----------CUGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 205793 0.68 0.937193
Target:  5'- cUGCUGUaACGAAcCGCUGuguGCGuuagguuACGCUCu -3'
miRNA:   3'- -ACGACA-UGCUUcGCGAC---UGC-------UGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 86184 0.68 0.927645
Target:  5'- cGCUGUGCGAccguucgacgccAGUGgUGauuGCGcCGCUCu -3'
miRNA:   3'- aCGACAUGCU------------UCGCgAC---UGCuGCGAG- -5'
29350 5' -54.4 NC_006150.1 + 217255 0.68 0.927645
Target:  5'- cGCuUGU-CGAGGCGUUGGUGGCGUUa -3'
miRNA:   3'- aCG-ACAuGCUUCGCGACUGCUGCGAg -5'
29350 5' -54.4 NC_006150.1 + 219921 0.68 0.922278
Target:  5'- aGC-GUGCGGAG-GUUGACGACGauggUCg -3'
miRNA:   3'- aCGaCAUGCUUCgCGACUGCUGCg---AG- -5'
29350 5' -54.4 NC_006150.1 + 217976 0.68 0.916675
Target:  5'- aUGCUGUguGCucGGCGCcGACGGCGggCu -3'
miRNA:   3'- -ACGACA--UGcuUCGCGaCUGCUGCgaG- -5'
29350 5' -54.4 NC_006150.1 + 4199 0.69 0.891936
Target:  5'- cUGCUGUGCGGucuGUGCgUGACaGGCaGCUg -3'
miRNA:   3'- -ACGACAUGCUu--CGCG-ACUG-CUG-CGAg -5'
29350 5' -54.4 NC_006150.1 + 38105 0.7 0.871015
Target:  5'- cGCgaaUGCGggGCGCUGGCugccucuCGCUUg -3'
miRNA:   3'- aCGac-AUGCuuCGCGACUGcu-----GCGAG- -5'
29350 5' -54.4 NC_006150.1 + 83274 0.71 0.832007
Target:  5'- aGCUGUcCGAuguucucaucaAGCGCUcGCGGCGCg- -3'
miRNA:   3'- aCGACAuGCU-----------UCGCGAcUGCUGCGag -5'
29350 5' -54.4 NC_006150.1 + 152524 0.71 0.812507
Target:  5'- aGCUGUACGugucAGGCGCcacgaaaaaggaucUGauuaaugcgGCGACGCUCu -3'
miRNA:   3'- aCGACAUGC----UUCGCG--------------AC---------UGCUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.