miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29351 5' -46.7 NC_006150.1 + 204858 1.13 0.019996
Target:  5'- gGUAGCCGAACACCAGUUUCAAAAGCCc -3'
miRNA:   3'- -CAUCGGCUUGUGGUCAAAGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 120632 0.73 0.986484
Target:  5'- ---aCCGAACGCCAGgcUUAGAcGCCu -3'
miRNA:   3'- caucGGCUUGUGGUCaaAGUUUuCGG- -5'
29351 5' -46.7 NC_006150.1 + 80528 0.72 0.992061
Target:  5'- -aGGCCGGAUgagcagaacaACguGUUUCGcGAGCCa -3'
miRNA:   3'- caUCGGCUUG----------UGguCAAAGUuUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 114064 0.72 0.994896
Target:  5'- -cGGCuCGAGCugCAGcagagUCGAAAGCa -3'
miRNA:   3'- caUCG-GCUUGugGUCaa---AGUUUUCGg -5'
29351 5' -46.7 NC_006150.1 + 9723 0.71 0.995634
Target:  5'- -gAGaCCaGGCACCAGgc-CAAAAGCCu -3'
miRNA:   3'- caUC-GGcUUGUGGUCaaaGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 56489 0.71 0.996282
Target:  5'- -cGGCUGAACugCAGg--CAGAcguggaaauGGCCa -3'
miRNA:   3'- caUCGGCUUGugGUCaaaGUUU---------UCGG- -5'
29351 5' -46.7 NC_006150.1 + 120787 0.71 0.996849
Target:  5'- --cGCCGAugACCAGcgagCAGGAGgCg -3'
miRNA:   3'- cauCGGCUugUGGUCaaa-GUUUUCgG- -5'
29351 5' -46.7 NC_006150.1 + 55797 0.71 0.997342
Target:  5'- -gAGCCGcaaaGCCAGcgUCGGAGGCUc -3'
miRNA:   3'- caUCGGCuug-UGGUCaaAGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 190269 0.71 0.997342
Target:  5'- -gAGCCGAu--CCAGUUgaUCGauaGAAGCCc -3'
miRNA:   3'- caUCGGCUuguGGUCAA--AGU---UUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 119687 0.7 0.998138
Target:  5'- aUGGUCGAuGCGCCucAGUUuugCGGAGGCCc -3'
miRNA:   3'- cAUCGGCU-UGUGG--UCAAa--GUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 107120 0.7 0.998454
Target:  5'- -aAGCCGAGCA-CGGUaaagcUCGGAAGCg -3'
miRNA:   3'- caUCGGCUUGUgGUCAa----AGUUUUCGg -5'
29351 5' -46.7 NC_006150.1 + 72873 0.7 0.998951
Target:  5'- uGUGGgCGggUACCGGggUCAu-GGCa -3'
miRNA:   3'- -CAUCgGCuuGUGGUCaaAGUuuUCGg -5'
29351 5' -46.7 NC_006150.1 + 58598 0.7 0.999144
Target:  5'- --cGCCG-GCGCCGGUguuccUCAAagacgccuGAGCCa -3'
miRNA:   3'- cauCGGCuUGUGGUCAa----AGUU--------UUCGG- -5'
29351 5' -46.7 NC_006150.1 + 157580 0.7 0.999144
Target:  5'- -cAGCgGcAGCACCAGUagCAccAAGCCa -3'
miRNA:   3'- caUCGgC-UUGUGGUCAaaGUu-UUCGG- -5'
29351 5' -46.7 NC_006150.1 + 857 0.69 0.999305
Target:  5'- cGUGcGCCGGGCGCCGGcggugUAGAcgguguGGCCg -3'
miRNA:   3'- -CAU-CGGCUUGUGGUCaaa--GUUU------UCGG- -5'
29351 5' -46.7 NC_006150.1 + 170285 0.69 0.999551
Target:  5'- -aAGCCuGcACGCCGGUaUCGGcgccgcGAGCCg -3'
miRNA:   3'- caUCGG-CuUGUGGUCAaAGUU------UUCGG- -5'
29351 5' -46.7 NC_006150.1 + 173652 0.69 0.999551
Target:  5'- -cGGCaugcaagggGAACACCgaacaAGUUUCAGAAGCa -3'
miRNA:   3'- caUCGg--------CUUGUGG-----UCAAAGUUUUCGg -5'
29351 5' -46.7 NC_006150.1 + 37531 0.68 0.999717
Target:  5'- uUGGCUGGAUcgaGCCGGUcaauAAGGCCg -3'
miRNA:   3'- cAUCGGCUUG---UGGUCAaaguUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 23326 0.68 0.999717
Target:  5'- -aGGgCGAugGCCAGgcaCAGAuGCCa -3'
miRNA:   3'- caUCgGCUugUGGUCaaaGUUUuCGG- -5'
29351 5' -46.7 NC_006150.1 + 53256 0.68 0.999778
Target:  5'- uGUGGUguAAUGCCAGUUUCAcuGAGCUu -3'
miRNA:   3'- -CAUCGgcUUGUGGUCAAAGUu-UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.