miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29351 5' -46.7 NC_006150.1 + 124944 0.66 0.999993
Target:  5'- cUGGCUGAGgugUAUCGGUaucUCAuGAGCCa -3'
miRNA:   3'- cAUCGGCUU---GUGGUCAa--AGUuUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 216389 0.68 0.999897
Target:  5'- --uGCCGAGCACCg----CAGccGCCa -3'
miRNA:   3'- cauCGGCUUGUGGucaaaGUUuuCGG- -5'
29351 5' -46.7 NC_006150.1 + 118441 0.67 0.999928
Target:  5'- cGUGGCCGGggcagagACGCCuuGUuuacugauguugcuuUUCAGGAGCg -3'
miRNA:   3'- -CAUCGGCU-------UGUGGu-CA---------------AAGUUUUCGg -5'
29351 5' -46.7 NC_006150.1 + 79841 0.67 0.999967
Target:  5'- aUGGCCGAAUAUCAcGUUUguAAA-CCa -3'
miRNA:   3'- cAUCGGCUUGUGGU-CAAAguUUUcGG- -5'
29351 5' -46.7 NC_006150.1 + 140663 0.67 0.999976
Target:  5'- -cGGCCGGugccggcaagACGuCCAGUaUUCAGGugcuGGCCg -3'
miRNA:   3'- caUCGGCU----------UGU-GGUCA-AAGUUU----UCGG- -5'
29351 5' -46.7 NC_006150.1 + 215395 0.67 0.999976
Target:  5'- ---aCCGAACAUCAGa---AAAAGCCc -3'
miRNA:   3'- caucGGCUUGUGGUCaaagUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 58360 0.66 0.999989
Target:  5'- aUGGCCGGcauguguuGCACCAGggaagacgaugCAucuGGCCu -3'
miRNA:   3'- cAUCGGCU--------UGUGGUCaaa--------GUuu-UCGG- -5'
29351 5' -46.7 NC_006150.1 + 132737 0.66 0.999991
Target:  5'- --uGUCGGcCACCaAGUUUUAcGAGGCCu -3'
miRNA:   3'- cauCGGCUuGUGG-UCAAAGU-UUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 211232 0.66 0.999991
Target:  5'- --cGCCaGA--GCCAGUgguuugUUAGAGGCCa -3'
miRNA:   3'- cauCGG-CUugUGGUCAa-----AGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 110902 0.68 0.999897
Target:  5'- -cGGCCGAugGaCCuGgacaCGAAGGCCu -3'
miRNA:   3'- caUCGGCUugU-GGuCaaa-GUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 90524 0.68 0.999866
Target:  5'- -cGGCCGAGuCugCAaacagUUCAAuGGCCg -3'
miRNA:   3'- caUCGGCUU-GugGUca---AAGUUuUCGG- -5'
29351 5' -46.7 NC_006150.1 + 23326 0.68 0.999717
Target:  5'- -aGGgCGAugGCCAGgcaCAGAuGCCa -3'
miRNA:   3'- caUCgGCUugUGGUCaaaGUUUuCGG- -5'
29351 5' -46.7 NC_006150.1 + 114064 0.72 0.994896
Target:  5'- -cGGCuCGAGCugCAGcagagUCGAAAGCa -3'
miRNA:   3'- caUCG-GCUUGugGUCaa---AGUUUUCGg -5'
29351 5' -46.7 NC_006150.1 + 9723 0.71 0.995634
Target:  5'- -gAGaCCaGGCACCAGgc-CAAAAGCCu -3'
miRNA:   3'- caUC-GGcUUGUGGUCaaaGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 55797 0.71 0.997342
Target:  5'- -gAGCCGcaaaGCCAGcgUCGGAGGCUc -3'
miRNA:   3'- caUCGGCuug-UGGUCaaAGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 190269 0.71 0.997342
Target:  5'- -gAGCCGAu--CCAGUUgaUCGauaGAAGCCc -3'
miRNA:   3'- caUCGGCUuguGGUCAA--AGU---UUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 119687 0.7 0.998138
Target:  5'- aUGGUCGAuGCGCCucAGUUuugCGGAGGCCc -3'
miRNA:   3'- cAUCGGCU-UGUGG--UCAAa--GUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 107120 0.7 0.998454
Target:  5'- -aAGCCGAGCA-CGGUaaagcUCGGAAGCg -3'
miRNA:   3'- caUCGGCUUGUgGUCAa----AGUUUUCGg -5'
29351 5' -46.7 NC_006150.1 + 72873 0.7 0.998951
Target:  5'- uGUGGgCGggUACCGGggUCAu-GGCa -3'
miRNA:   3'- -CAUCgGCuuGUGGUCaaAGUuuUCGg -5'
29351 5' -46.7 NC_006150.1 + 58598 0.7 0.999144
Target:  5'- --cGCCG-GCGCCGGUguuccUCAAagacgccuGAGCCa -3'
miRNA:   3'- cauCGGCuUGUGGUCAa----AGUU--------UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.