miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29351 5' -46.7 NC_006150.1 + 857 0.69 0.999305
Target:  5'- cGUGcGCCGGGCGCCGGcggugUAGAcgguguGGCCg -3'
miRNA:   3'- -CAU-CGGCUUGUGGUCaaa--GUUU------UCGG- -5'
29351 5' -46.7 NC_006150.1 + 1011 0.68 0.999897
Target:  5'- gGUGGCCuGACGCUAGgcggcgcagCGAgcGCCa -3'
miRNA:   3'- -CAUCGGcUUGUGGUCaaa------GUUuuCGG- -5'
29351 5' -46.7 NC_006150.1 + 9723 0.71 0.995634
Target:  5'- -gAGaCCaGGCACCAGgc-CAAAAGCCu -3'
miRNA:   3'- caUC-GGcUUGUGGUCaaaGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 23326 0.68 0.999717
Target:  5'- -aGGgCGAugGCCAGgcaCAGAuGCCa -3'
miRNA:   3'- caUCgGCUugUGGUCaaaGUUUuCGG- -5'
29351 5' -46.7 NC_006150.1 + 29501 0.67 0.999955
Target:  5'- --uGCCGAACGCCAauaaugaAGAAGCa -3'
miRNA:   3'- cauCGGCUUGUGGUcaaag--UUUUCGg -5'
29351 5' -46.7 NC_006150.1 + 37531 0.68 0.999717
Target:  5'- uUGGCUGGAUcgaGCCGGUcaauAAGGCCg -3'
miRNA:   3'- cAUCGGCUUG---UGGUCAaaguUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 40301 0.66 0.999991
Target:  5'- aUAGCC--GCACCAc--UCGAAGGUCg -3'
miRNA:   3'- cAUCGGcuUGUGGUcaaAGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 53256 0.68 0.999778
Target:  5'- uGUGGUguAAUGCCAGUUUCAcuGAGCUu -3'
miRNA:   3'- -CAUCGgcUUGUGGUCAAAGUu-UUCGG- -5'
29351 5' -46.7 NC_006150.1 + 55797 0.71 0.997342
Target:  5'- -gAGCCGcaaaGCCAGcgUCGGAGGCUc -3'
miRNA:   3'- caUCGGCuug-UGGUCaaAGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 56489 0.71 0.996282
Target:  5'- -cGGCUGAACugCAGg--CAGAcguggaaauGGCCa -3'
miRNA:   3'- caUCGGCUUGugGUCaaaGUUU---------UCGG- -5'
29351 5' -46.7 NC_006150.1 + 58360 0.66 0.999989
Target:  5'- aUGGCCGGcauguguuGCACCAGggaagacgaugCAucuGGCCu -3'
miRNA:   3'- cAUCGGCU--------UGUGGUCaaa--------GUuu-UCGG- -5'
29351 5' -46.7 NC_006150.1 + 58598 0.7 0.999144
Target:  5'- --cGCCG-GCGCCGGUguuccUCAAagacgccuGAGCCa -3'
miRNA:   3'- cauCGGCuUGUGGUCAa----AGUU--------UUCGG- -5'
29351 5' -46.7 NC_006150.1 + 72873 0.7 0.998951
Target:  5'- uGUGGgCGggUACCGGggUCAu-GGCa -3'
miRNA:   3'- -CAUCgGCuuGUGGUCaaAGUuuUCGg -5'
29351 5' -46.7 NC_006150.1 + 76786 0.66 0.999993
Target:  5'- gGUAGCUGuGCACC-GUUagCAGGGGUUg -3'
miRNA:   3'- -CAUCGGCuUGUGGuCAAa-GUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 79841 0.67 0.999967
Target:  5'- aUGGCCGAAUAUCAcGUUUguAAA-CCa -3'
miRNA:   3'- cAUCGGCUUGUGGU-CAAAguUUUcGG- -5'
29351 5' -46.7 NC_006150.1 + 80528 0.72 0.992061
Target:  5'- -aGGCCGGAUgagcagaacaACguGUUUCGcGAGCCa -3'
miRNA:   3'- caUCGGCUUG----------UGguCAAAGUuUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 90524 0.68 0.999866
Target:  5'- -cGGCCGAGuCugCAaacagUUCAAuGGCCg -3'
miRNA:   3'- caUCGGCUU-GugGUca---AAGUUuUCGG- -5'
29351 5' -46.7 NC_006150.1 + 107120 0.7 0.998454
Target:  5'- -aAGCCGAGCA-CGGUaaagcUCGGAAGCg -3'
miRNA:   3'- caUCGGCUUGUgGUCAa----AGUUUUCGg -5'
29351 5' -46.7 NC_006150.1 + 109124 0.67 0.999965
Target:  5'- -cGGCCGAGgaaacaGCCAGaaucggccgcCGAGAGCCa -3'
miRNA:   3'- caUCGGCUUg-----UGGUCaaa-------GUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 110902 0.68 0.999897
Target:  5'- -cGGCCGAugGaCCuGgacaCGAAGGCCu -3'
miRNA:   3'- caUCGGCUugU-GGuCaaa-GUUUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.