miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29352 5' -51.8 NC_006150.1 + 175873 0.66 0.996244
Target:  5'- uCUUCGGcuCCAAUgCGAuCGCCGCCGUa -3'
miRNA:   3'- cGAGGCUu-GGUUAgGUU-GUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 218923 0.66 0.996244
Target:  5'- cCUCCGGcGCCAA-CUAGCACCGUCGa -3'
miRNA:   3'- cGAGGCU-UGGUUaGGUUGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 169178 0.66 0.996244
Target:  5'- --aCCGAACCAcuagcaCCAgcccuaggcacACGCCGCCAa -3'
miRNA:   3'- cgaGGCUUGGUua----GGU-----------UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 136179 0.66 0.996244
Target:  5'- cGCUCUucACCGucagCUGugGCCGCCAg -3'
miRNA:   3'- -CGAGGcuUGGUua--GGUugUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 173314 0.66 0.996244
Target:  5'- uGCUaCUGuuuCCGAUCacuCGCCACCAg -3'
miRNA:   3'- -CGA-GGCuu-GGUUAGguuGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 150067 0.66 0.995615
Target:  5'- gGUUCgCGGccaGCCAggCUcGCACCGCCAc -3'
miRNA:   3'- -CGAG-GCU---UGGUuaGGuUGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 157651 0.66 0.995615
Target:  5'- -gUCCaAGCCcaaGAUcCCAGCACCACCc- -3'
miRNA:   3'- cgAGGcUUGG---UUA-GGUUGUGGUGGua -5'
29352 5' -51.8 NC_006150.1 + 153840 0.66 0.995547
Target:  5'- ---aCGAACCAcuccucacauaaaGUCCAaaACAUCACCAg -3'
miRNA:   3'- cgagGCUUGGU-------------UAGGU--UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 152308 0.66 0.994902
Target:  5'- cGC-CaCGAgcGCCAAggCCAgcaGCACCACCGc -3'
miRNA:   3'- -CGaG-GCU--UGGUUa-GGU---UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 116959 0.66 0.994098
Target:  5'- cGCUCagcuGGACCcggcCCAACGCCACgGg -3'
miRNA:   3'- -CGAGg---CUUGGuua-GGUUGUGGUGgUa -5'
29352 5' -51.8 NC_006150.1 + 106698 0.66 0.994098
Target:  5'- cGCUCaucgGGGCCAGUCgGcACGCgACCGa -3'
miRNA:   3'- -CGAGg---CUUGGUUAGgU-UGUGgUGGUa -5'
29352 5' -51.8 NC_006150.1 + 127445 0.66 0.994098
Target:  5'- uGCUCaCcAGCCAAgccCCGGCuCCACCGa -3'
miRNA:   3'- -CGAG-GcUUGGUUa--GGUUGuGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 128846 0.66 0.994098
Target:  5'- -aUCCGcuucGCgGAUCCAggaGCGCUACCAa -3'
miRNA:   3'- cgAGGCu---UGgUUAGGU---UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 91309 0.66 0.993195
Target:  5'- cGUUCaGGAUCAGUUCA--GCCACCAUa -3'
miRNA:   3'- -CGAGgCUUGGUUAGGUugUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 85654 0.66 0.993195
Target:  5'- --aCCGGccGCCGuacaCAGCGCCGCCAg -3'
miRNA:   3'- cgaGGCU--UGGUuag-GUUGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 88763 0.66 0.993195
Target:  5'- cGC-CUGucCCGAUCCAGCACUGCg-- -3'
miRNA:   3'- -CGaGGCuuGGUUAGGUUGUGGUGgua -5'
29352 5' -51.8 NC_006150.1 + 594 0.66 0.992184
Target:  5'- cGCUCgCG-GCCAcaCCGucuACACCGCCGg -3'
miRNA:   3'- -CGAG-GCuUGGUuaGGU---UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 171634 0.66 0.992184
Target:  5'- uGCUCCGccGACUGAUCCuguGCAgUACUAc -3'
miRNA:   3'- -CGAGGC--UUGGUUAGGu--UGUgGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 221356 0.66 0.992184
Target:  5'- uCUCCuaacgcuGCCuGUCCAACACC-CCAc -3'
miRNA:   3'- cGAGGcu-----UGGuUAGGUUGUGGuGGUa -5'
29352 5' -51.8 NC_006150.1 + 107457 0.67 0.991058
Target:  5'- -gUCUGuacAACCAcaagauggcgGUCCAACGCCGCCc- -3'
miRNA:   3'- cgAGGC---UUGGU----------UAGGUUGUGGUGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.