Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29356 | 5' | -48.7 | NC_006150.1 | + | 214689 | 1.11 | 0.016059 |
Target: 5'- cCGACAGCGAACAAACGCUCUCAACAGg -3' miRNA: 3'- -GCUGUCGCUUGUUUGCGAGAGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 3042 | 0.73 | 0.958153 |
Target: 5'- -cGCAGCaGugGAGCGCUCagCAGCAGg -3' miRNA: 3'- gcUGUCGcUugUUUGCGAGa-GUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 119734 | 0.72 | 0.971488 |
Target: 5'- uGGCAGa-AGCGAGCGUcCUCAACGGa -3' miRNA: 3'- gCUGUCgcUUGUUUGCGaGAGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 94909 | 0.72 | 0.976863 |
Target: 5'- uCGACGGUGGgaauggugcuguACuGGCGCUC-CAGCAGa -3' miRNA: 3'- -GCUGUCGCU------------UGuUUGCGAGaGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 92791 | 0.71 | 0.983476 |
Target: 5'- -cGCGGUGGGCccGCGCUCUC-GCAGc -3' miRNA: 3'- gcUGUCGCUUGuuUGCGAGAGuUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 124646 | 0.71 | 0.987014 |
Target: 5'- aGGCGGCGGcgGCGGGCGCaCUgGACAu -3' miRNA: 3'- gCUGUCGCU--UGUUUGCGaGAgUUGUc -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 137931 | 0.71 | 0.987014 |
Target: 5'- -uGCAcGCGGuuagcaucACAAACGCUCUCuuCAGg -3' miRNA: 3'- gcUGU-CGCU--------UGUUUGCGAGAGuuGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 31412 | 0.7 | 0.993329 |
Target: 5'- gGACAGCaGAgauacugugACAGACGCUCuuccuccuuuUCAGCAu -3' miRNA: 3'- gCUGUCG-CU---------UGUUUGCGAG----------AGUUGUc -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 171687 | 0.7 | 0.993329 |
Target: 5'- aCGGCGGCGA--GAACGCUgaCAAgCAGu -3' miRNA: 3'- -GCUGUCGCUugUUUGCGAgaGUU-GUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 108843 | 0.7 | 0.995029 |
Target: 5'- uCGACGgauggugguGCGGGCGuugGCUCUCGGCGGc -3' miRNA: 3'- -GCUGU---------CGCUUGUuugCGAGAGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 120207 | 0.69 | 0.996359 |
Target: 5'- uGACAGUGAGCAcGCGCccuaUCUCcaucaugaAAUAGg -3' miRNA: 3'- gCUGUCGCUUGUuUGCG----AGAG--------UUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 51278 | 0.69 | 0.997382 |
Target: 5'- aUGACucaggGGCGGACAAuuGCGCUC-CAGCc- -3' miRNA: 3'- -GCUG-----UCGCUUGUU--UGCGAGaGUUGuc -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 15288 | 0.68 | 0.997796 |
Target: 5'- -aACGGUGAcuGCAGACGCUaccaaugCAACGGa -3' miRNA: 3'- gcUGUCGCU--UGUUUGCGAga-----GUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 116764 | 0.68 | 0.997796 |
Target: 5'- uCGGCA-CGAacuGCAGAaccaagaagaGCUCUCGGCAGg -3' miRNA: 3'- -GCUGUcGCU---UGUUUg---------CGAGAGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 138893 | 0.68 | 0.998461 |
Target: 5'- aGAUAGgGAAUcaccACGCgCUCGACAGu -3' miRNA: 3'- gCUGUCgCUUGuu--UGCGaGAGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 92766 | 0.68 | 0.998724 |
Target: 5'- --uCAGCGAccgaGAACGCcgugCUCAGCGGg -3' miRNA: 3'- gcuGUCGCUug--UUUGCGa---GAGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 150104 | 0.68 | 0.998724 |
Target: 5'- gGGCGGCGGguacACAGuauCGCUCUgacgagcgcgcgCAACAGc -3' miRNA: 3'- gCUGUCGCU----UGUUu--GCGAGA------------GUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 69524 | 0.68 | 0.998724 |
Target: 5'- aGGCAGCGAugcccAUAAAUGgUCUCAgACAc -3' miRNA: 3'- gCUGUCGCU-----UGUUUGCgAGAGU-UGUc -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 56531 | 0.67 | 0.99912 |
Target: 5'- cCGuuCAGCGcGCAGACGUgcccagcugugucUUUCAGCGGg -3' miRNA: 3'- -GCu-GUCGCuUGUUUGCG-------------AGAGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 32896 | 0.67 | 0.99912 |
Target: 5'- aGACAGCGGcuccgaagcggagGCgGAGCGCggUCGGCGGc -3' miRNA: 3'- gCUGUCGCU-------------UG-UUUGCGagAGUUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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