miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29356 5' -48.7 NC_006150.1 + 997 0.67 0.999137
Target:  5'- aGGCGGCGcAGCGAGCGC-CaCAcGCGGg -3'
miRNA:   3'- gCUGUCGC-UUGUUUGCGaGaGU-UGUC- -5'
29356 5' -48.7 NC_006150.1 + 2907 0.66 0.999819
Target:  5'- uGACGGCGGGCAGAUGCg---AGgAGg -3'
miRNA:   3'- gCUGUCGCUUGUUUGCGagagUUgUC- -5'
29356 5' -48.7 NC_006150.1 + 3042 0.73 0.958153
Target:  5'- -cGCAGCaGugGAGCGCUCagCAGCAGg -3'
miRNA:   3'- gcUGUCGcUugUUUGCGAGa-GUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 3497 0.67 0.999137
Target:  5'- uGACAGCcuACAGACcuGUUgCUCGGCGGg -3'
miRNA:   3'- gCUGUCGcuUGUUUG--CGA-GAGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 11504 0.67 0.99943
Target:  5'- uGAuCAGaaGAgAAACGCUCUCGccACAGg -3'
miRNA:   3'- gCU-GUCgcUUgUUUGCGAGAGU--UGUC- -5'
29356 5' -48.7 NC_006150.1 + 13614 0.67 0.99943
Target:  5'- aCGAC--UGAAUuaacuACGCUCUCAACAa -3'
miRNA:   3'- -GCUGucGCUUGuu---UGCGAGAGUUGUc -5'
29356 5' -48.7 NC_006150.1 + 15288 0.68 0.997796
Target:  5'- -aACGGUGAcuGCAGACGCUaccaaugCAACGGa -3'
miRNA:   3'- gcUGUCGCU--UGUUUGCGAga-----GUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 15390 0.67 0.999137
Target:  5'- ---gAGUGAu--AGCGCUCUCAACAu -3'
miRNA:   3'- gcugUCGCUuguUUGCGAGAGUUGUc -5'
29356 5' -48.7 NC_006150.1 + 31412 0.7 0.993329
Target:  5'- gGACAGCaGAgauacugugACAGACGCUCuuccuccuuuUCAGCAu -3'
miRNA:   3'- gCUGUCG-CU---------UGUUUGCGAG----------AGUUGUc -5'
29356 5' -48.7 NC_006150.1 + 32896 0.67 0.99912
Target:  5'- aGACAGCGGcuccgaagcggagGCgGAGCGCggUCGGCGGc -3'
miRNA:   3'- gCUGUCGCU-------------UG-UUUGCGagAGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 35466 0.66 0.999708
Target:  5'- -uGCAGaUGGACAcucauaaacgcGGCGCagUCUCAACAGa -3'
miRNA:   3'- gcUGUC-GCUUGU-----------UUGCG--AGAGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 36212 0.67 0.999137
Target:  5'- uGACAGCugcuGAGCAGcuGCGUgugCAGCAGa -3'
miRNA:   3'- gCUGUCG----CUUGUU--UGCGagaGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 40165 0.66 0.999859
Target:  5'- uGACAGCGuACGAGCcguaccucaucGCUCUgaccgaucaguaCAACGGc -3'
miRNA:   3'- gCUGUCGCuUGUUUG-----------CGAGA------------GUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 50506 0.67 0.99943
Target:  5'- uGGCGGUGAAUAAACuGagaCUCAACAu -3'
miRNA:   3'- gCUGUCGCUUGUUUG-Cga-GAGUUGUc -5'
29356 5' -48.7 NC_006150.1 + 51278 0.69 0.997382
Target:  5'- aUGACucaggGGCGGACAAuuGCGCUC-CAGCc- -3'
miRNA:   3'- -GCUG-----UCGCUUGUU--UGCGAGaGUUGuc -5'
29356 5' -48.7 NC_006150.1 + 56531 0.67 0.99912
Target:  5'- cCGuuCAGCGcGCAGACGUgcccagcugugucUUUCAGCGGg -3'
miRNA:   3'- -GCu-GUCGCuUGUUUGCG-------------AGAGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 60727 0.66 0.999891
Target:  5'- aGGCAGCGAGauGugGUUCgaaauUCGACAa -3'
miRNA:   3'- gCUGUCGCUUguUugCGAG-----AGUUGUc -5'
29356 5' -48.7 NC_006150.1 + 69524 0.68 0.998724
Target:  5'- aGGCAGCGAugcccAUAAAUGgUCUCAgACAc -3'
miRNA:   3'- gCUGUCGCU-----UGUUUGCgAGAGU-UGUc -5'
29356 5' -48.7 NC_006150.1 + 71066 0.66 0.999859
Target:  5'- uGGCAGCGGGCAAGaggaggagcCGCguaUCAguGCGGc -3'
miRNA:   3'- gCUGUCGCUUGUUU---------GCGag-AGU--UGUC- -5'
29356 5' -48.7 NC_006150.1 + 72942 0.67 0.999297
Target:  5'- uCGAUAGCGuAGCGGACGCUgaUGAucCAGa -3'
miRNA:   3'- -GCUGUCGC-UUGUUUGCGAgaGUU--GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.