miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29356 5' -48.7 NC_006150.1 + 91817 0.66 0.999769
Target:  5'- aGACGGCGuAGCAggGACGCgggCAAcCAGu -3'
miRNA:   3'- gCUGUCGC-UUGU--UUGCGagaGUU-GUC- -5'
29356 5' -48.7 NC_006150.1 + 32896 0.67 0.99912
Target:  5'- aGACAGCGGcuccgaagcggagGCgGAGCGCggUCGGCGGc -3'
miRNA:   3'- gCUGUCGCU-------------UG-UUUGCGagAGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 15390 0.67 0.999137
Target:  5'- ---gAGUGAu--AGCGCUCUCAACAu -3'
miRNA:   3'- gcugUCGCUuguUUGCGAGAGUUGUc -5'
29356 5' -48.7 NC_006150.1 + 72942 0.67 0.999297
Target:  5'- uCGAUAGCGuAGCGGACGCUgaUGAucCAGa -3'
miRNA:   3'- -GCUGUCGC-UUGUUUGCGAgaGUU--GUC- -5'
29356 5' -48.7 NC_006150.1 + 13614 0.67 0.99943
Target:  5'- aCGAC--UGAAUuaacuACGCUCUCAACAa -3'
miRNA:   3'- -GCUGucGCUUGuu---UGCGAGAGUUGUc -5'
29356 5' -48.7 NC_006150.1 + 81949 0.67 0.999632
Target:  5'- gGAguuGCGAGCAGAccuccagccCGCUCUCcgggGACAGg -3'
miRNA:   3'- gCUgu-CGCUUGUUU---------GCGAGAG----UUGUC- -5'
29356 5' -48.7 NC_006150.1 + 114832 0.67 0.999632
Target:  5'- -cACGGCGAGCGGG-GCUggCAGCAGc -3'
miRNA:   3'- gcUGUCGCUUGUUUgCGAgaGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 35466 0.66 0.999708
Target:  5'- -uGCAGaUGGACAcucauaaacgcGGCGCagUCUCAACAGa -3'
miRNA:   3'- gcUGUC-GCUUGU-----------UUGCG--AGAGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 114014 0.66 0.999708
Target:  5'- gCGACGGCGcauAGCAAGCcuuGCUCUU--CGGg -3'
miRNA:   3'- -GCUGUCGC---UUGUUUG---CGAGAGuuGUC- -5'
29356 5' -48.7 NC_006150.1 + 150104 0.68 0.998724
Target:  5'- gGGCGGCGGguacACAGuauCGCUCUgacgagcgcgcgCAACAGc -3'
miRNA:   3'- gCUGUCGCU----UGUUu--GCGAGA------------GUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 69524 0.68 0.998724
Target:  5'- aGGCAGCGAugcccAUAAAUGgUCUCAgACAc -3'
miRNA:   3'- gCUGUCGCU-----UGUUUGCgAGAGU-UGUc -5'
29356 5' -48.7 NC_006150.1 + 138893 0.68 0.998461
Target:  5'- aGAUAGgGAAUcaccACGCgCUCGACAGu -3'
miRNA:   3'- gCUGUCgCUUGuu--UGCGaGAGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 94909 0.72 0.976863
Target:  5'- uCGACGGUGGgaauggugcuguACuGGCGCUC-CAGCAGa -3'
miRNA:   3'- -GCUGUCGCU------------UGuUUGCGAGaGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 124646 0.71 0.987014
Target:  5'- aGGCGGCGGcgGCGGGCGCaCUgGACAu -3'
miRNA:   3'- gCUGUCGCU--UGUUUGCGaGAgUUGUc -5'
29356 5' -48.7 NC_006150.1 + 31412 0.7 0.993329
Target:  5'- gGACAGCaGAgauacugugACAGACGCUCuuccuccuuuUCAGCAu -3'
miRNA:   3'- gCUGUCG-CU---------UGUUUGCGAG----------AGUUGUc -5'
29356 5' -48.7 NC_006150.1 + 171687 0.7 0.993329
Target:  5'- aCGGCGGCGA--GAACGCUgaCAAgCAGu -3'
miRNA:   3'- -GCUGUCGCUugUUUGCGAgaGUU-GUC- -5'
29356 5' -48.7 NC_006150.1 + 108843 0.7 0.995029
Target:  5'- uCGACGgauggugguGCGGGCGuugGCUCUCGGCGGc -3'
miRNA:   3'- -GCUGU---------CGCUUGUuugCGAGAGUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 51278 0.69 0.997382
Target:  5'- aUGACucaggGGCGGACAAuuGCGCUC-CAGCc- -3'
miRNA:   3'- -GCUG-----UCGCUUGUU--UGCGAGaGUUGuc -5'
29356 5' -48.7 NC_006150.1 + 15288 0.68 0.997796
Target:  5'- -aACGGUGAcuGCAGACGCUaccaaugCAACGGa -3'
miRNA:   3'- gcUGUCGCU--UGUUUGCGAga-----GUUGUC- -5'
29356 5' -48.7 NC_006150.1 + 116764 0.68 0.997796
Target:  5'- uCGGCA-CGAacuGCAGAaccaagaagaGCUCUCGGCAGg -3'
miRNA:   3'- -GCUGUcGCU---UGUUUg---------CGAGAGUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.