miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29361 3' -63.8 NC_006150.1 + 68431 0.66 0.648796
Target:  5'- aUCCCguccCCGaAGuCACCGCAGCacCGCUAg -3'
miRNA:   3'- cAGGGac--GGC-UC-GUGGCGUCG--GCGGU- -5'
29361 3' -63.8 NC_006150.1 + 152648 0.66 0.648796
Target:  5'- aGUCCCgcacaccCCGcAG-GCCGUGGCCGCCu -3'
miRNA:   3'- -CAGGGac-----GGC-UCgUGGCGUCGGCGGu -5'
29361 3' -63.8 NC_006150.1 + 496 0.66 0.639206
Target:  5'- cGUCUCUGCgGGGCaggacGCCGgCAGCCuggcGCUg -3'
miRNA:   3'- -CAGGGACGgCUCG-----UGGC-GUCGG----CGGu -5'
29361 3' -63.8 NC_006150.1 + 3701 0.66 0.635368
Target:  5'- cUCUCUGUCGuGGCuguacucgaaccugACCGCcaauagcAGCCGCCAc -3'
miRNA:   3'- cAGGGACGGC-UCG--------------UGGCG-------UCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 88784 0.66 0.620018
Target:  5'- aUCCagGUCGuGUAgUGCAGCCGCCu -3'
miRNA:   3'- cAGGgaCGGCuCGUgGCGUCGGCGGu -5'
29361 3' -63.8 NC_006150.1 + 154848 0.66 0.620018
Target:  5'- aUgCUUGgcaCCGGGCACguucuggcccuCGCGGCCGCCGu -3'
miRNA:   3'- cAgGGAC---GGCUCGUG-----------GCGUCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 219767 0.66 0.614265
Target:  5'- uGUCggCCUGUuagcugcucucacugCGGGCuaCGCAGCCGCCAg -3'
miRNA:   3'- -CAG--GGACG---------------GCUCGugGCGUCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 109131 0.66 0.610433
Target:  5'- uGUUCCgcgGCCGAGgaaacaGCCagaauCGGCCGCCGa -3'
miRNA:   3'- -CAGGGa--CGGCUCg-----UGGc----GUCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 119717 0.66 0.610433
Target:  5'- -cCUCUGCUGuauguGCACCGUcGCUGUCAc -3'
miRNA:   3'- caGGGACGGCu----CGUGGCGuCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 202920 0.67 0.581787
Target:  5'- cUUCUUGuuGuGCAacagcaGCAGCCGCCAc -3'
miRNA:   3'- cAGGGACggCuCGUgg----CGUCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 149047 0.67 0.569454
Target:  5'- aGUCCUgcugccaccaguacUGCUGcuacCGCCGCuGCCGCCAc -3'
miRNA:   3'- -CAGGG--------------ACGGCuc--GUGGCGuCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 116862 0.67 0.56284
Target:  5'- aUUCUUGCCGAGUACUGUAucGUCGUCc -3'
miRNA:   3'- cAGGGACGGCUCGUGGCGU--CGGCGGu -5'
29361 3' -63.8 NC_006150.1 + 107940 0.68 0.534749
Target:  5'- aGUCCCcgGCCGucGCucccCCaGCGGCCGaCCAc -3'
miRNA:   3'- -CAGGGa-CGGCu-CGu---GG-CGUCGGC-GGU- -5'
29361 3' -63.8 NC_006150.1 + 136189 0.68 0.534749
Target:  5'- -aCUCUGCUGGcGCucuucaccgucaGCUGUGGCCGCCAg -3'
miRNA:   3'- caGGGACGGCU-CG------------UGGCGUCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 154567 0.68 0.52457
Target:  5'- aUCaCUUGCUgagcgauGAGCACgGCGGCCGCgAg -3'
miRNA:   3'- cAG-GGACGG-------CUCGUGgCGUCGGCGgU- -5'
29361 3' -63.8 NC_006150.1 + 47964 0.68 0.501723
Target:  5'- gGUCCUUGCCgcgagguguGAGC-CgguccucgaggaggaCGCGGCCGCCGu -3'
miRNA:   3'- -CAGGGACGG---------CUCGuG---------------GCGUCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 35944 0.68 0.498107
Target:  5'- gGUCCCUgGCCacacucugcuGCACaCGCAGCUGCuCAg -3'
miRNA:   3'- -CAGGGA-CGGcu--------CGUG-GCGUCGGCG-GU- -5'
29361 3' -63.8 NC_006150.1 + 219993 0.68 0.498107
Target:  5'- -gUCCUGCCGc-CGCCGCuGCUGCUg -3'
miRNA:   3'- caGGGACGGCucGUGGCGuCGGCGGu -5'
29361 3' -63.8 NC_006150.1 + 170283 0.7 0.420237
Target:  5'- --gCCUGCaCGccgguaucGGCGCCGCgAGCCGCUAu -3'
miRNA:   3'- cagGGACG-GC--------UCGUGGCG-UCGGCGGU- -5'
29361 3' -63.8 NC_006150.1 + 2232 0.7 0.388064
Target:  5'- uUCagCUGCaggCGAGgGCCGUGGCCGCCGa -3'
miRNA:   3'- cAGg-GACG---GCUCgUGGCGUCGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.