Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29362 | 3' | -56 | NC_006150.1 | + | 1485 | 0.66 | 0.936072 |
Target: 5'- -aGCGCU-GUGCGGGUAGGaagaugGUGCAGg -3' miRNA: 3'- gaCGCGAcCGCGUCCGUUUa-----CGUGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 103784 | 0.66 | 0.925873 |
Target: 5'- -cGCGCUGGCuGCcaauggccguuGGGCAuua-CACAGg -3' miRNA: 3'- gaCGCGACCG-CG-----------UCCGUuuacGUGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 31704 | 0.66 | 0.914728 |
Target: 5'- uCUGCGUcguUGGCGCucGGUucgAAAUGCugAa -3' miRNA: 3'- -GACGCG---ACCGCGu-CCG---UUUACGugUc -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 202835 | 0.67 | 0.908803 |
Target: 5'- -gGUGgaGGCGgAGGCGcuuGAaGCGCGGg -3' miRNA: 3'- gaCGCgaCCGCgUCCGU---UUaCGUGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 1785 | 0.67 | 0.902645 |
Target: 5'- --uUGCUGGUGCcucuGGgGAGUGCACGc -3' miRNA: 3'- gacGCGACCGCGu---CCgUUUACGUGUc -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 216925 | 0.67 | 0.902645 |
Target: 5'- -gGCGCUgcGGuCGCGGGUcag-GCACGGc -3' miRNA: 3'- gaCGCGA--CC-GCGUCCGuuuaCGUGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 73168 | 0.67 | 0.896256 |
Target: 5'- -aGCGCUGGCagacaugauGCGGGa--GUGUGCGGu -3' miRNA: 3'- gaCGCGACCG---------CGUCCguuUACGUGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 133256 | 0.67 | 0.889639 |
Target: 5'- ----aCUGGCGCAgGGCGAuAUGUGCAGg -3' miRNA: 3'- gacgcGACCGCGU-CCGUU-UACGUGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 152473 | 0.67 | 0.889639 |
Target: 5'- uCUGCGC-GGCGguGGCcgAAAaGCAgcCAGa -3' miRNA: 3'- -GACGCGaCCGCguCCG--UUUaCGU--GUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 214898 | 0.67 | 0.882798 |
Target: 5'- -gGCGCUGGCGguGcGCucGAUGUgugaugauuuugACGGg -3' miRNA: 3'- gaCGCGACCGCguC-CGu-UUACG------------UGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 856 | 0.67 | 0.882798 |
Target: 5'- gUGCGCcgGGCGCcGGC-GGUGUagACGGu -3' miRNA: 3'- gACGCGa-CCGCGuCCGuUUACG--UGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 106991 | 0.67 | 0.882798 |
Target: 5'- aUGCGgaGGUGCAGcCGGAUaCACGGa -3' miRNA: 3'- gACGCgaCCGCGUCcGUUUAcGUGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 181637 | 0.68 | 0.875738 |
Target: 5'- gUGCGCUGGCGgAGcgagaagccgcaGCAAcgGCAgAa -3' miRNA: 3'- gACGCGACCGCgUC------------CGUUuaCGUgUc -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 116650 | 0.68 | 0.868462 |
Target: 5'- gCUGUGaUGGCGCAG-CAGccguUGUACAGg -3' miRNA: 3'- -GACGCgACCGCGUCcGUUu---ACGUGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 183522 | 0.68 | 0.868462 |
Target: 5'- uUGCGCUGcggauucuGCGUGGGCuccGGUGCGgGGu -3' miRNA: 3'- gACGCGAC--------CGCGUCCGu--UUACGUgUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 72128 | 0.68 | 0.860976 |
Target: 5'- --uCGCUcGGCGCGGGCGGua-CACGGg -3' miRNA: 3'- gacGCGA-CCGCGUCCGUUuacGUGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 140776 | 0.68 | 0.837318 |
Target: 5'- -cGCGCUcGGCGCAGGUGAAg--ACAa -3' miRNA: 3'- gaCGCGA-CCGCGUCCGUUUacgUGUc -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 95197 | 0.68 | 0.837318 |
Target: 5'- aUGgGCUGGUgaguguGCAGGUAG-UGCGCGa -3' miRNA: 3'- gACgCGACCG------CGUCCGUUuACGUGUc -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 109191 | 0.68 | 0.837318 |
Target: 5'- gCUGUGUUGcGUGCAGaCGAG-GCGCAGg -3' miRNA: 3'- -GACGCGAC-CGCGUCcGUUUaCGUGUC- -5' |
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29362 | 3' | -56 | NC_006150.1 | + | 217611 | 0.69 | 0.829054 |
Target: 5'- cCUGCGCcaGCGCAGGgcGGUGCGCu- -3' miRNA: 3'- -GACGCGacCGCGUCCguUUACGUGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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