miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 141015 1.09 0.005432
Target:  5'- cACGCGAGACGCGGAUAUCGAUAGGACu -3'
miRNA:   3'- -UGCGCUCUGCGCCUAUAGCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 105795 0.83 0.246419
Target:  5'- uGCGCGAGGCGCGGAg--CGAcgcGGACg -3'
miRNA:   3'- -UGCGCUCUGCGCCUauaGCUau-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 34619 0.81 0.313335
Target:  5'- aGCGCGAGGCGCGGGUGgggCGAccgcgGGGGu -3'
miRNA:   3'- -UGCGCUCUGCGCCUAUa--GCUa----UCCUg -5'
29366 5' -52.8 NC_006151.1 + 27296 0.76 0.534642
Target:  5'- cGCGCuuggGGGGCGUGGggGUCGAggcggGGGACg -3'
miRNA:   3'- -UGCG----CUCUGCGCCuaUAGCUa----UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 27442 0.75 0.596331
Target:  5'- gGCGCGgcGGACGCGGuggGUCG--GGGGCg -3'
miRNA:   3'- -UGCGC--UCUGCGCCua-UAGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 33963 0.75 0.617189
Target:  5'- -gGCGGGACGCGGcgcccgCGcgGGGACa -3'
miRNA:   3'- ugCGCUCUGCGCCuaua--GCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 122958 0.75 0.627639
Target:  5'- cGCGgGGGGCGCGGAcgccggCGAcgGGGGCg -3'
miRNA:   3'- -UGCgCUCUGCGCCUaua---GCUa-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 10229 0.73 0.710636
Target:  5'- cUGCG-GACGCGGAggggggCGAgGGGACa -3'
miRNA:   3'- uGCGCuCUGCGCCUaua---GCUaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 61251 0.73 0.720797
Target:  5'- cGCGCGccacgaGGACGCGGcggcaggcgGUAUCGugcgGGGACg -3'
miRNA:   3'- -UGCGC------UCUGCGCC---------UAUAGCua--UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 46011 0.73 0.720797
Target:  5'- gACGCccguggagGGGGCGaCGGAUGUCGAcgGGGAa -3'
miRNA:   3'- -UGCG--------CUCUGC-GCCUAUAGCUa-UCCUg -5'
29366 5' -52.8 NC_006151.1 + 100766 0.72 0.779752
Target:  5'- uGCGCGAGGcCGCGGAccgCGuccuGGGCg -3'
miRNA:   3'- -UGCGCUCU-GCGCCUauaGCuau-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 130678 0.72 0.779752
Target:  5'- cCGCGGGGCGCggcgcaGGAUGUCcg-GGGGCc -3'
miRNA:   3'- uGCGCUCUGCG------CCUAUAGcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 31647 0.72 0.789152
Target:  5'- cACGCGGGcGCGCGGggAggGAggAGGGCg -3'
miRNA:   3'- -UGCGCUC-UGCGCCuaUagCUa-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 89174 0.72 0.789152
Target:  5'- -gGCG-GGCGCGGggGUCGGgggcggagAGGGCg -3'
miRNA:   3'- ugCGCuCUGCGCCuaUAGCUa-------UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 2239 0.71 0.798404
Target:  5'- gGCGCG-GACGCuGGUcUCGAagGGGGCa -3'
miRNA:   3'- -UGCGCuCUGCGcCUAuAGCUa-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 110210 0.71 0.816428
Target:  5'- uGCGgGAGACGCGGA---CGAcccucaAGGGCa -3'
miRNA:   3'- -UGCgCUCUGCGCCUauaGCUa-----UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 28107 0.71 0.825182
Target:  5'- -aGCGGGGCGCGGcuccucGUCGGcucGGGGCg -3'
miRNA:   3'- ugCGCUCUGCGCCua----UAGCUa--UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 31968 0.71 0.825182
Target:  5'- gACGCGGGACGUgcccgccgccugGGAgccggCGAggAGGACa -3'
miRNA:   3'- -UGCGCUCUGCG------------CCUaua--GCUa-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 91544 0.71 0.832054
Target:  5'- uGCGCGAGguGCGCGGccagcggggCGAUGGcGGCg -3'
miRNA:   3'- -UGCGCUC--UGCGCCuaua-----GCUAUC-CUG- -5'
29366 5' -52.8 NC_006151.1 + 8624 0.7 0.850315
Target:  5'- gUGUGAGGguccugUGCGGGUGUCGGUGGuGCg -3'
miRNA:   3'- uGCGCUCU------GCGCCUAUAGCUAUCcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.