miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 2239 0.71 0.798404
Target:  5'- gGCGCG-GACGCuGGUcUCGAagGGGGCa -3'
miRNA:   3'- -UGCGCuCUGCGcCUAuAGCUa-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 3137 0.66 0.975877
Target:  5'- gGCGCGGGGCGCccucGGcgGgcUCGGcgcagagcuccucgUGGGGCa -3'
miRNA:   3'- -UGCGCUCUGCG----CCuaU--AGCU--------------AUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 4352 0.68 0.940824
Target:  5'- gGCGCG-GACGCGGg---CGcagAGGGCc -3'
miRNA:   3'- -UGCGCuCUGCGCCuauaGCua-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 8624 0.7 0.850315
Target:  5'- gUGUGAGGguccugUGCGGGUGUCGGUGGuGCg -3'
miRNA:   3'- uGCGCUCU------GCGCCUAUAGCUAUCcUG- -5'
29366 5' -52.8 NC_006151.1 + 10229 0.73 0.710636
Target:  5'- cUGCG-GACGCGGAggggggCGAgGGGACa -3'
miRNA:   3'- uGCGCuCUGCGCCUaua---GCUaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 11707 0.67 0.957896
Target:  5'- gGCGCGugcGGCGCGGAa--CGAgagGGGGg -3'
miRNA:   3'- -UGCGCu--CUGCGCCUauaGCUa--UCCUg -5'
29366 5' -52.8 NC_006151.1 + 14484 0.68 0.919818
Target:  5'- -gGCGGGugGgCGGggGUCGggAGGGa -3'
miRNA:   3'- ugCGCUCugC-GCCuaUAGCuaUCCUg -5'
29366 5' -52.8 NC_006151.1 + 17006 0.66 0.968239
Target:  5'- cGCGCGAacauGGCGCGGGUGgcc--GGGAUc -3'
miRNA:   3'- -UGCGCU----CUGCGCCUAUagcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 21319 0.66 0.974041
Target:  5'- gGCGCGAGACGCccGGcg--CGGcGGGGg -3'
miRNA:   3'- -UGCGCUCUGCG--CCuauaGCUaUCCUg -5'
29366 5' -52.8 NC_006151.1 + 21498 0.69 0.913943
Target:  5'- cCGgGGGGCGCGGGcGUCaccGGGGCg -3'
miRNA:   3'- uGCgCUCUGCGCCUaUAGcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 22268 0.67 0.965016
Target:  5'- uACGCG-GGCGgGGGgaagGUCGGcgcGGGCa -3'
miRNA:   3'- -UGCGCuCUGCgCCUa---UAGCUau-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 23005 0.7 0.850315
Target:  5'- cGCGCGgguggGGGCGCGGGgg-UGGUGGaGGCg -3'
miRNA:   3'- -UGCGC-----UCUGCGCCUauaGCUAUC-CUG- -5'
29366 5' -52.8 NC_006151.1 + 27296 0.76 0.534642
Target:  5'- cGCGCuuggGGGGCGUGGggGUCGAggcggGGGACg -3'
miRNA:   3'- -UGCG----CUCUGCGCCuaUAGCUa----UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 27442 0.75 0.596331
Target:  5'- gGCGCGgcGGACGCGGuggGUCG--GGGGCg -3'
miRNA:   3'- -UGCGC--UCUGCGCCua-UAGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 27949 0.67 0.965016
Target:  5'- cGCGCGGGGUGgGGAgggaGggGGGACg -3'
miRNA:   3'- -UGCGCUCUGCgCCUauagCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 28107 0.71 0.825182
Target:  5'- -aGCGGGGCGCGGcuccucGUCGGcucGGGGCg -3'
miRNA:   3'- ugCGCUCUGCGCCua----UAGCUa--UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 29435 0.69 0.907821
Target:  5'- cCGCGGGGgGCGGcgGggaGAgGGGACg -3'
miRNA:   3'- uGCGCUCUgCGCCuaUag-CUaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 30166 0.66 0.973771
Target:  5'- aGCGCGGGAgGgCGGGUgagagagGUCGGggaggccGGGGCc -3'
miRNA:   3'- -UGCGCUCUgC-GCCUA-------UAGCUa------UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 30400 0.67 0.957896
Target:  5'- gACGCGAgucGACGgGGAgaggAagGAggggAGGACg -3'
miRNA:   3'- -UGCGCU---CUGCgCCUa---UagCUa---UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 31647 0.72 0.789152
Target:  5'- cACGCGGGcGCGCGGggAggGAggAGGGCg -3'
miRNA:   3'- -UGCGCUC-UGCGCCuaUagCUa-UCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.