miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 31968 0.71 0.825182
Target:  5'- gACGCGGGACGUgcccgccgccugGGAgccggCGAggAGGACa -3'
miRNA:   3'- -UGCGCUCUGCG------------CCUaua--GCUa-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 32101 0.68 0.940824
Target:  5'- gACGCggggaaGAGACGCGGAgagg---GGGACg -3'
miRNA:   3'- -UGCG------CUCUGCGCCUauagcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 33221 0.69 0.887994
Target:  5'- cACGCGGGGCGCcccggcgggcgGGAggggGUCcgggggaagGGUGGGGCg -3'
miRNA:   3'- -UGCGCUCUGCG-----------CCUa---UAG---------CUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 33963 0.75 0.617189
Target:  5'- -gGCGGGACGCGGcgcccgCGcgGGGACa -3'
miRNA:   3'- ugCGCUCUGCGCCuaua--GCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 34619 0.81 0.313335
Target:  5'- aGCGCGAGGCGCGGGUGgggCGAccgcgGGGGu -3'
miRNA:   3'- -UGCGCUCUGCGCCUAUa--GCUa----UCCUg -5'
29366 5' -52.8 NC_006151.1 + 35358 0.7 0.88377
Target:  5'- gACGCGAGAggaaGUGGGcgagagaaaucccauUggccGUCGAUGGGGCa -3'
miRNA:   3'- -UGCGCUCUg---CGCCU---------------A----UAGCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 42803 0.68 0.940824
Target:  5'- -gGCGGGACGCGucGAgGUCGuGUGGGGg -3'
miRNA:   3'- ugCGCUCUGCGC--CUaUAGC-UAUCCUg -5'
29366 5' -52.8 NC_006151.1 + 45046 0.67 0.96157
Target:  5'- aGCGUGGGGggUGUGGGgg--GAUGGGACg -3'
miRNA:   3'- -UGCGCUCU--GCGCCUauagCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 45081 0.69 0.907821
Target:  5'- aGCGCGcaccGCGCGGuguggcGUCGAUGGGGu -3'
miRNA:   3'- -UGCGCuc--UGCGCCua----UAGCUAUCCUg -5'
29366 5' -52.8 NC_006151.1 + 46011 0.73 0.720797
Target:  5'- gACGCccguggagGGGGCGaCGGAUGUCGAcgGGGAa -3'
miRNA:   3'- -UGCG--------CUCUGC-GCCUAUAGCUa-UCCUg -5'
29366 5' -52.8 NC_006151.1 + 49629 0.66 0.968239
Target:  5'- uGCGCGAGugG-GGGUGggcCGuggAGGAg -3'
miRNA:   3'- -UGCGCUCugCgCCUAUa--GCua-UCCUg -5'
29366 5' -52.8 NC_006151.1 + 51034 0.67 0.957896
Target:  5'- -gGUGGGAUGgGGAUGgugaCGGUGGuGGCg -3'
miRNA:   3'- ugCGCUCUGCgCCUAUa---GCUAUC-CUG- -5'
29366 5' -52.8 NC_006151.1 + 61251 0.73 0.720797
Target:  5'- cGCGCGccacgaGGACGCGGcggcaggcgGUAUCGugcgGGGACg -3'
miRNA:   3'- -UGCGC------UCUGCGCC---------UAUAGCua--UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 63156 0.67 0.96157
Target:  5'- cGCGCGAcACGCGGua--CGGggccuUGGGGCg -3'
miRNA:   3'- -UGCGCUcUGCGCCuauaGCU-----AUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 63585 0.68 0.935946
Target:  5'- -gGCGuGGCGCGGGUucgCGAacacGGGCa -3'
miRNA:   3'- ugCGCuCUGCGCCUAua-GCUau--CCUG- -5'
29366 5' -52.8 NC_006151.1 + 77016 0.7 0.858289
Target:  5'- cCGCGAGcCGUGGAg--CGccAGGACg -3'
miRNA:   3'- uGCGCUCuGCGCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 77907 0.69 0.907821
Target:  5'- -gGCGAGACGCGGcccacggccGUggUGGUgaAGGGCg -3'
miRNA:   3'- ugCGCUCUGCGCC---------UAuaGCUA--UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 78662 0.67 0.957896
Target:  5'- gGCGgcCGGGGCGCGGGUGcUGGacGGGCu -3'
miRNA:   3'- -UGC--GCUCUGCGCCUAUaGCUauCCUG- -5'
29366 5' -52.8 NC_006151.1 + 89116 0.66 0.974041
Target:  5'- uGCGCGAGAC-CGaGGg--CGGcGGGACc -3'
miRNA:   3'- -UGCGCUCUGcGC-CUauaGCUaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 89174 0.72 0.789152
Target:  5'- -gGCG-GGCGCGGggGUCGGgggcggagAGGGCg -3'
miRNA:   3'- ugCGCuCUGCGCCuaUAGCUa-------UCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.