miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 106668 0.67 0.96157
Target:  5'- uGCGCGAGGcCGCGGcgcUCGGcgcgccGGGCg -3'
miRNA:   3'- -UGCGCUCU-GCGCCuauAGCUau----CCUG- -5'
29366 5' -52.8 NC_006151.1 + 63156 0.67 0.96157
Target:  5'- cGCGCGAcACGCGGua--CGGggccuUGGGGCg -3'
miRNA:   3'- -UGCGCUcUGCGCCuauaGCU-----AUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 22268 0.67 0.965016
Target:  5'- uACGCG-GGCGgGGGgaagGUCGGcgcGGGCa -3'
miRNA:   3'- -UGCGCuCUGCgCCUa---UAGCUau-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 27949 0.67 0.965016
Target:  5'- cGCGCGGGGUGgGGAgggaGggGGGACg -3'
miRNA:   3'- -UGCGCUCUGCgCCUauagCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 134998 0.67 0.965016
Target:  5'- gGCGCGucuuGGCGgGGGcg-CGggGGGGCa -3'
miRNA:   3'- -UGCGCu---CUGCgCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 113046 0.67 0.965016
Target:  5'- cUGCGcGGCgGCGGAg--CGcgAGGACg -3'
miRNA:   3'- uGCGCuCUG-CGCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 90664 0.67 0.961213
Target:  5'- uGCGCGGGGCgGCGGGccgcuUGUCccccgcgGcgGGGGCg -3'
miRNA:   3'- -UGCGCUCUG-CGCCU-----AUAG-------CuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 127381 0.68 0.939868
Target:  5'- cGCGgGGGugGCGGGggccgcggccgaGUCGAcGGGAg -3'
miRNA:   3'- -UGCgCUCugCGCCUa-----------UAGCUaUCCUg -5'
29366 5' -52.8 NC_006151.1 + 14484 0.68 0.919818
Target:  5'- -gGCGGGugGgCGGggGUCGggAGGGa -3'
miRNA:   3'- ugCGCUCugC-GCCuaUAGCuaUCCUg -5'
29366 5' -52.8 NC_006151.1 + 96979 0.68 0.923782
Target:  5'- gACGCG-GACGCGGcacggagggucagCGggGGGACa -3'
miRNA:   3'- -UGCGCuCUGCGCCuaua---------GCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 96590 0.68 0.925992
Target:  5'- gGCGCGAGGCGCcGGGcgcgggcgcgccgacGUCGugcccgAGGGCg -3'
miRNA:   3'- -UGCGCUCUGCG-CCUa--------------UAGCua----UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 63585 0.68 0.935946
Target:  5'- -gGCGuGGCGCGGGUucgCGAacacGGGCa -3'
miRNA:   3'- ugCGCuCUGCGCCUAua-GCUau--CCUG- -5'
29366 5' -52.8 NC_006151.1 + 110790 0.68 0.935946
Target:  5'- cGCGCGGGGCuaggGCGGGgggCGA--GGGCa -3'
miRNA:   3'- -UGCGCUCUG----CGCCUauaGCUauCCUG- -5'
29366 5' -52.8 NC_006151.1 + 42803 0.68 0.940824
Target:  5'- -gGCGGGACGCGucGAgGUCGuGUGGGGg -3'
miRNA:   3'- ugCGCUCUGCGC--CUaUAGC-UAUCCUg -5'
29366 5' -52.8 NC_006151.1 + 4352 0.68 0.940824
Target:  5'- gGCGCG-GACGCGGg---CGcagAGGGCc -3'
miRNA:   3'- -UGCGCuCUGCGCCuauaGCua-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 32101 0.68 0.940824
Target:  5'- gACGCggggaaGAGACGCGGAgagg---GGGACg -3'
miRNA:   3'- -UGCG------CUCUGCGCCUauagcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 139641 0.69 0.913943
Target:  5'- gGCGCc-GGCGCGGggGUCGcgGcGGGCg -3'
miRNA:   3'- -UGCGcuCUGCGCCuaUAGCuaU-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 21498 0.69 0.913943
Target:  5'- cCGgGGGGCGCGGGcGUCaccGGGGCg -3'
miRNA:   3'- uGCgCUCUGCGCCUaUAGcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 45081 0.69 0.907821
Target:  5'- aGCGCGcaccGCGCGGuguggcGUCGAUGGGGu -3'
miRNA:   3'- -UGCGCuc--UGCGCCua----UAGCUAUCCUg -5'
29366 5' -52.8 NC_006151.1 + 121413 0.69 0.907821
Target:  5'- gGCGCG-GGCGgGGAcGUCGc-GGGGCu -3'
miRNA:   3'- -UGCGCuCUGCgCCUaUAGCuaUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.