Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29366 | 5' | -52.8 | NC_006151.1 | + | 23005 | 0.7 | 0.850315 |
Target: 5'- cGCGCGgguggGGGCGCGGGgg-UGGUGGaGGCg -3' miRNA: 3'- -UGCGC-----UCUGCGCCUauaGCUAUC-CUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 35358 | 0.7 | 0.88377 |
Target: 5'- gACGCGAGAggaaGUGGGcgagagaaaucccauUggccGUCGAUGGGGCa -3' miRNA: 3'- -UGCGCUCUg---CGCCU---------------A----UAGCUAUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 77016 | 0.7 | 0.858289 |
Target: 5'- cCGCGAGcCGUGGAg--CGccAGGACg -3' miRNA: 3'- uGCGCUCuGCGCCUauaGCuaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 8624 | 0.7 | 0.850315 |
Target: 5'- gUGUGAGGguccugUGCGGGUGUCGGUGGuGCg -3' miRNA: 3'- uGCGCUCU------GCGCCUAUAGCUAUCcUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 129969 | 0.7 | 0.873592 |
Target: 5'- cGCGCGAGcgcacgGCGCGGAaggccucGUCGucgGGGAUg -3' miRNA: 3'- -UGCGCUC------UGCGCCUa------UAGCua-UCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 77907 | 0.69 | 0.907821 |
Target: 5'- -gGCGAGACGCGGcccacggccGUggUGGUgaAGGGCg -3' miRNA: 3'- ugCGCUCUGCGCC---------UAuaGCUA--UCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 29435 | 0.69 | 0.907821 |
Target: 5'- cCGCGGGGgGCGGcgGggaGAgGGGACg -3' miRNA: 3'- uGCGCUCUgCGCCuaUag-CUaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 121413 | 0.69 | 0.907821 |
Target: 5'- gGCGCG-GGCGgGGAcGUCGc-GGGGCu -3' miRNA: 3'- -UGCGCuCUGCgCCUaUAGCuaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 45081 | 0.69 | 0.907821 |
Target: 5'- aGCGCGcaccGCGCGGuguggcGUCGAUGGGGu -3' miRNA: 3'- -UGCGCuc--UGCGCCua----UAGCUAUCCUg -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 21498 | 0.69 | 0.913943 |
Target: 5'- cCGgGGGGCGCGGGcGUCaccGGGGCg -3' miRNA: 3'- uGCgCUCUGCGCCUaUAGcuaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 139641 | 0.69 | 0.913943 |
Target: 5'- gGCGCc-GGCGCGGggGUCGcgGcGGGCg -3' miRNA: 3'- -UGCGcuCUGCGCCuaUAGCuaU-CCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 33221 | 0.69 | 0.887994 |
Target: 5'- cACGCGGGGCGCcccggcgggcgGGAggggGUCcgggggaagGGUGGGGCg -3' miRNA: 3'- -UGCGCUCUGCG-----------CCUa---UAG---------CUAUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 110790 | 0.68 | 0.935946 |
Target: 5'- cGCGCGGGGCuaggGCGGGgggCGA--GGGCa -3' miRNA: 3'- -UGCGCUCUG----CGCCUauaGCUauCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 63585 | 0.68 | 0.935946 |
Target: 5'- -gGCGuGGCGCGGGUucgCGAacacGGGCa -3' miRNA: 3'- ugCGCuCUGCGCCUAua-GCUau--CCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 96590 | 0.68 | 0.925992 |
Target: 5'- gGCGCGAGGCGCcGGGcgcgggcgcgccgacGUCGugcccgAGGGCg -3' miRNA: 3'- -UGCGCUCUGCG-CCUa--------------UAGCua----UCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 96979 | 0.68 | 0.923782 |
Target: 5'- gACGCG-GACGCGGcacggagggucagCGggGGGACa -3' miRNA: 3'- -UGCGCuCUGCGCCuaua---------GCuaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 14484 | 0.68 | 0.919818 |
Target: 5'- -gGCGGGugGgCGGggGUCGggAGGGa -3' miRNA: 3'- ugCGCUCugC-GCCuaUAGCuaUCCUg -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 127381 | 0.68 | 0.939868 |
Target: 5'- cGCGgGGGugGCGGGggccgcggccgaGUCGAcGGGAg -3' miRNA: 3'- -UGCgCUCugCGCCUa-----------UAGCUaUCCUg -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 42803 | 0.68 | 0.940824 |
Target: 5'- -gGCGGGACGCGucGAgGUCGuGUGGGGg -3' miRNA: 3'- ugCGCUCUGCGC--CUaUAGC-UAUCCUg -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 4352 | 0.68 | 0.940824 |
Target: 5'- gGCGCG-GACGCGGg---CGcagAGGGCc -3' miRNA: 3'- -UGCGCuCUGCGCCuauaGCua-UCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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