miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 23005 0.7 0.850315
Target:  5'- cGCGCGgguggGGGCGCGGGgg-UGGUGGaGGCg -3'
miRNA:   3'- -UGCGC-----UCUGCGCCUauaGCUAUC-CUG- -5'
29366 5' -52.8 NC_006151.1 + 8624 0.7 0.850315
Target:  5'- gUGUGAGGguccugUGCGGGUGUCGGUGGuGCg -3'
miRNA:   3'- uGCGCUCU------GCGCCUAUAGCUAUCcUG- -5'
29366 5' -52.8 NC_006151.1 + 77016 0.7 0.858289
Target:  5'- cCGCGAGcCGUGGAg--CGccAGGACg -3'
miRNA:   3'- uGCGCUCuGCGCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 129969 0.7 0.873592
Target:  5'- cGCGCGAGcgcacgGCGCGGAaggccucGUCGucgGGGAUg -3'
miRNA:   3'- -UGCGCUC------UGCGCCUa------UAGCua-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 35358 0.7 0.88377
Target:  5'- gACGCGAGAggaaGUGGGcgagagaaaucccauUggccGUCGAUGGGGCa -3'
miRNA:   3'- -UGCGCUCUg---CGCCU---------------A----UAGCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 33221 0.69 0.887994
Target:  5'- cACGCGGGGCGCcccggcgggcgGGAggggGUCcgggggaagGGUGGGGCg -3'
miRNA:   3'- -UGCGCUCUGCG-----------CCUa---UAG---------CUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 45081 0.69 0.907821
Target:  5'- aGCGCGcaccGCGCGGuguggcGUCGAUGGGGu -3'
miRNA:   3'- -UGCGCuc--UGCGCCua----UAGCUAUCCUg -5'
29366 5' -52.8 NC_006151.1 + 121413 0.69 0.907821
Target:  5'- gGCGCG-GGCGgGGAcGUCGc-GGGGCu -3'
miRNA:   3'- -UGCGCuCUGCgCCUaUAGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 77907 0.69 0.907821
Target:  5'- -gGCGAGACGCGGcccacggccGUggUGGUgaAGGGCg -3'
miRNA:   3'- ugCGCUCUGCGCC---------UAuaGCUA--UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 29435 0.69 0.907821
Target:  5'- cCGCGGGGgGCGGcgGggaGAgGGGACg -3'
miRNA:   3'- uGCGCUCUgCGCCuaUag-CUaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 21498 0.69 0.913943
Target:  5'- cCGgGGGGCGCGGGcGUCaccGGGGCg -3'
miRNA:   3'- uGCgCUCUGCGCCUaUAGcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 139641 0.69 0.913943
Target:  5'- gGCGCc-GGCGCGGggGUCGcgGcGGGCg -3'
miRNA:   3'- -UGCGcuCUGCGCCuaUAGCuaU-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 14484 0.68 0.919818
Target:  5'- -gGCGGGugGgCGGggGUCGggAGGGa -3'
miRNA:   3'- ugCGCUCugC-GCCuaUAGCuaUCCUg -5'
29366 5' -52.8 NC_006151.1 + 96979 0.68 0.923782
Target:  5'- gACGCG-GACGCGGcacggagggucagCGggGGGACa -3'
miRNA:   3'- -UGCGCuCUGCGCCuaua---------GCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 96590 0.68 0.925992
Target:  5'- gGCGCGAGGCGCcGGGcgcgggcgcgccgacGUCGugcccgAGGGCg -3'
miRNA:   3'- -UGCGCUCUGCG-CCUa--------------UAGCua----UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 110790 0.68 0.935946
Target:  5'- cGCGCGGGGCuaggGCGGGgggCGA--GGGCa -3'
miRNA:   3'- -UGCGCUCUG----CGCCUauaGCUauCCUG- -5'
29366 5' -52.8 NC_006151.1 + 63585 0.68 0.935946
Target:  5'- -gGCGuGGCGCGGGUucgCGAacacGGGCa -3'
miRNA:   3'- ugCGCuCUGCGCCUAua-GCUau--CCUG- -5'
29366 5' -52.8 NC_006151.1 + 127381 0.68 0.939868
Target:  5'- cGCGgGGGugGCGGGggccgcggccgaGUCGAcGGGAg -3'
miRNA:   3'- -UGCgCUCugCGCCUa-----------UAGCUaUCCUg -5'
29366 5' -52.8 NC_006151.1 + 4352 0.68 0.940824
Target:  5'- gGCGCG-GACGCGGg---CGcagAGGGCc -3'
miRNA:   3'- -UGCGCuCUGCGCCuauaGCua-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 32101 0.68 0.940824
Target:  5'- gACGCggggaaGAGACGCGGAgagg---GGGACg -3'
miRNA:   3'- -UGCG------CUCUGCGCCUauagcuaUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.