miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 32101 0.68 0.940824
Target:  5'- gACGCggggaaGAGACGCGGAgagg---GGGACg -3'
miRNA:   3'- -UGCG------CUCUGCGCCUauagcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 130958 0.67 0.945456
Target:  5'- cGCGCG-GGCGCGGGggcCGGUAccccggccgcccGGGCu -3'
miRNA:   3'- -UGCGCuCUGCGCCUauaGCUAU------------CCUG- -5'
29366 5' -52.8 NC_006151.1 + 120789 0.67 0.94724
Target:  5'- gACGCGGccGACGCGGAgcgcgccgcgcgCGAggugcuGGACg -3'
miRNA:   3'- -UGCGCU--CUGCGCCUaua---------GCUau----CCUG- -5'
29366 5' -52.8 NC_006151.1 + 130512 0.67 0.94724
Target:  5'- cGCGCGucucGGGCGCGGGcGUCGcGUacacgcccccgcgcgAGGGCg -3'
miRNA:   3'- -UGCGC----UCUGCGCCUaUAGC-UA---------------UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 78662 0.67 0.957896
Target:  5'- gGCGgcCGGGGCGCGGGUGcUGGacGGGCu -3'
miRNA:   3'- -UGC--GCUCUGCGCCUAUaGCUauCCUG- -5'
29366 5' -52.8 NC_006151.1 + 11707 0.67 0.957896
Target:  5'- gGCGCGugcGGCGCGGAa--CGAgagGGGGg -3'
miRNA:   3'- -UGCGCu--CUGCGCCUauaGCUa--UCCUg -5'
29366 5' -52.8 NC_006151.1 + 30400 0.67 0.957896
Target:  5'- gACGCGAgucGACGgGGAgaggAagGAggggAGGACg -3'
miRNA:   3'- -UGCGCU---CUGCgCCUa---UagCUa---UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 51034 0.67 0.957896
Target:  5'- -gGUGGGAUGgGGAUGgugaCGGUGGuGGCg -3'
miRNA:   3'- ugCGCUCUGCgCCUAUa---GCUAUC-CUG- -5'
29366 5' -52.8 NC_006151.1 + 90664 0.67 0.961213
Target:  5'- uGCGCGGGGCgGCGGGccgcuUGUCccccgcgGcgGGGGCg -3'
miRNA:   3'- -UGCGCUCUG-CGCCU-----AUAG-------CuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 63156 0.67 0.96157
Target:  5'- cGCGCGAcACGCGGua--CGGggccuUGGGGCg -3'
miRNA:   3'- -UGCGCUcUGCGCCuauaGCU-----AUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 106668 0.67 0.96157
Target:  5'- uGCGCGAGGcCGCGGcgcUCGGcgcgccGGGCg -3'
miRNA:   3'- -UGCGCUCU-GCGCCuauAGCUau----CCUG- -5'
29366 5' -52.8 NC_006151.1 + 45046 0.67 0.96157
Target:  5'- aGCGUGGGGggUGUGGGgg--GAUGGGACg -3'
miRNA:   3'- -UGCGCUCU--GCGCCUauagCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 113046 0.67 0.965016
Target:  5'- cUGCGcGGCgGCGGAg--CGcgAGGACg -3'
miRNA:   3'- uGCGCuCUG-CGCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 134998 0.67 0.965016
Target:  5'- gGCGCGucuuGGCGgGGGcg-CGggGGGGCa -3'
miRNA:   3'- -UGCGCu---CUGCgCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 27949 0.67 0.965016
Target:  5'- cGCGCGGGGUGgGGAgggaGggGGGACg -3'
miRNA:   3'- -UGCGCUCUGCgCCUauagCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 22268 0.67 0.965016
Target:  5'- uACGCG-GGCGgGGGgaagGUCGGcgcGGGCa -3'
miRNA:   3'- -UGCGCuCUGCgCCUa---UAGCUau-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 127257 0.66 0.967612
Target:  5'- gGCGCGAcGCGCGGuggccggugagGUCGAUgacGGGuCg -3'
miRNA:   3'- -UGCGCUcUGCGCCua---------UAGCUA---UCCuG- -5'
29366 5' -52.8 NC_006151.1 + 49629 0.66 0.968239
Target:  5'- uGCGCGAGugG-GGGUGggcCGuggAGGAg -3'
miRNA:   3'- -UGCGCUCugCgCCUAUa--GCua-UCCUg -5'
29366 5' -52.8 NC_006151.1 + 17006 0.66 0.968239
Target:  5'- cGCGCGAacauGGCGCGGGUGgcc--GGGAUc -3'
miRNA:   3'- -UGCGCU----CUGCGCCUAUagcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 141790 0.66 0.971245
Target:  5'- cCG-GGGACGCGGG--UCGGUcccgccccgAGGGCa -3'
miRNA:   3'- uGCgCUCUGCGCCUauAGCUA---------UCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.