miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 21319 0.66 0.974041
Target:  5'- gGCGCGAGACGCccGGcg--CGGcGGGGg -3'
miRNA:   3'- -UGCGCUCUGCG--CCuauaGCUaUCCUg -5'
29366 5' -52.8 NC_006151.1 + 89116 0.66 0.974041
Target:  5'- uGCGCGAGAC-CGaGGg--CGGcGGGACc -3'
miRNA:   3'- -UGCGCUCUGcGC-CUauaGCUaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 97323 0.66 0.974041
Target:  5'- cGCGCGcuGCGCGGGUcGUUGAacAGGuACg -3'
miRNA:   3'- -UGCGCucUGCGCCUA-UAGCUa-UCC-UG- -5'
29366 5' -52.8 NC_006151.1 + 3137 0.66 0.975877
Target:  5'- gGCGCGGGGCGCccucGGcgGgcUCGGcgcagagcuccucgUGGGGCa -3'
miRNA:   3'- -UGCGCUCUGCG----CCuaU--AGCU--------------AUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 97906 0.66 0.976635
Target:  5'- gACG-GAGGCGCGGAUgccGUCGccgccgAGGcCg -3'
miRNA:   3'- -UGCgCUCUGCGCCUA---UAGCua----UCCuG- -5'
29366 5' -52.8 NC_006151.1 + 27949 0.67 0.965016
Target:  5'- cGCGCGGGGUGgGGAgggaGggGGGACg -3'
miRNA:   3'- -UGCGCUCUGCgCCUauagCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 22268 0.67 0.965016
Target:  5'- uACGCG-GGCGgGGGgaagGUCGGcgcGGGCa -3'
miRNA:   3'- -UGCGCuCUGCgCCUa---UAGCUau-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 4352 0.68 0.940824
Target:  5'- gGCGCG-GACGCGGg---CGcagAGGGCc -3'
miRNA:   3'- -UGCGCuCUGCGCCuauaGCua-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 32101 0.68 0.940824
Target:  5'- gACGCggggaaGAGACGCGGAgagg---GGGACg -3'
miRNA:   3'- -UGCG------CUCUGCGCCUauagcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 130958 0.67 0.945456
Target:  5'- cGCGCG-GGCGCGGGggcCGGUAccccggccgcccGGGCu -3'
miRNA:   3'- -UGCGCuCUGCGCCUauaGCUAU------------CCUG- -5'
29366 5' -52.8 NC_006151.1 + 120789 0.67 0.94724
Target:  5'- gACGCGGccGACGCGGAgcgcgccgcgcgCGAggugcuGGACg -3'
miRNA:   3'- -UGCGCU--CUGCGCCUaua---------GCUau----CCUG- -5'
29366 5' -52.8 NC_006151.1 + 130512 0.67 0.94724
Target:  5'- cGCGCGucucGGGCGCGGGcGUCGcGUacacgcccccgcgcgAGGGCg -3'
miRNA:   3'- -UGCGC----UCUGCGCCUaUAGC-UA---------------UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 51034 0.67 0.957896
Target:  5'- -gGUGGGAUGgGGAUGgugaCGGUGGuGGCg -3'
miRNA:   3'- ugCGCUCUGCgCCUAUa---GCUAUC-CUG- -5'
29366 5' -52.8 NC_006151.1 + 30400 0.67 0.957896
Target:  5'- gACGCGAgucGACGgGGAgaggAagGAggggAGGACg -3'
miRNA:   3'- -UGCGCU---CUGCgCCUa---UagCUa---UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 11707 0.67 0.957896
Target:  5'- gGCGCGugcGGCGCGGAa--CGAgagGGGGg -3'
miRNA:   3'- -UGCGCu--CUGCGCCUauaGCUa--UCCUg -5'
29366 5' -52.8 NC_006151.1 + 78662 0.67 0.957896
Target:  5'- gGCGgcCGGGGCGCGGGUGcUGGacGGGCu -3'
miRNA:   3'- -UGC--GCUCUGCGCCUAUaGCUauCCUG- -5'
29366 5' -52.8 NC_006151.1 + 90664 0.67 0.961213
Target:  5'- uGCGCGGGGCgGCGGGccgcuUGUCccccgcgGcgGGGGCg -3'
miRNA:   3'- -UGCGCUCUG-CGCCU-----AUAG-------CuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 45046 0.67 0.96157
Target:  5'- aGCGUGGGGggUGUGGGgg--GAUGGGACg -3'
miRNA:   3'- -UGCGCUCU--GCGCCUauagCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 106668 0.67 0.96157
Target:  5'- uGCGCGAGGcCGCGGcgcUCGGcgcgccGGGCg -3'
miRNA:   3'- -UGCGCUCU-GCGCCuauAGCUau----CCUG- -5'
29366 5' -52.8 NC_006151.1 + 63156 0.67 0.96157
Target:  5'- cGCGCGAcACGCGGua--CGGggccuUGGGGCg -3'
miRNA:   3'- -UGCGCUcUGCGCCuauaGCU-----AUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.