Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29366 | 5' | -52.8 | NC_006151.1 | + | 21319 | 0.66 | 0.974041 |
Target: 5'- gGCGCGAGACGCccGGcg--CGGcGGGGg -3' miRNA: 3'- -UGCGCUCUGCG--CCuauaGCUaUCCUg -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 89116 | 0.66 | 0.974041 |
Target: 5'- uGCGCGAGAC-CGaGGg--CGGcGGGACc -3' miRNA: 3'- -UGCGCUCUGcGC-CUauaGCUaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 97323 | 0.66 | 0.974041 |
Target: 5'- cGCGCGcuGCGCGGGUcGUUGAacAGGuACg -3' miRNA: 3'- -UGCGCucUGCGCCUA-UAGCUa-UCC-UG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 3137 | 0.66 | 0.975877 |
Target: 5'- gGCGCGGGGCGCccucGGcgGgcUCGGcgcagagcuccucgUGGGGCa -3' miRNA: 3'- -UGCGCUCUGCG----CCuaU--AGCU--------------AUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 97906 | 0.66 | 0.976635 |
Target: 5'- gACG-GAGGCGCGGAUgccGUCGccgccgAGGcCg -3' miRNA: 3'- -UGCgCUCUGCGCCUA---UAGCua----UCCuG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 27949 | 0.67 | 0.965016 |
Target: 5'- cGCGCGGGGUGgGGAgggaGggGGGACg -3' miRNA: 3'- -UGCGCUCUGCgCCUauagCuaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 22268 | 0.67 | 0.965016 |
Target: 5'- uACGCG-GGCGgGGGgaagGUCGGcgcGGGCa -3' miRNA: 3'- -UGCGCuCUGCgCCUa---UAGCUau-CCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 4352 | 0.68 | 0.940824 |
Target: 5'- gGCGCG-GACGCGGg---CGcagAGGGCc -3' miRNA: 3'- -UGCGCuCUGCGCCuauaGCua-UCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 32101 | 0.68 | 0.940824 |
Target: 5'- gACGCggggaaGAGACGCGGAgagg---GGGACg -3' miRNA: 3'- -UGCG------CUCUGCGCCUauagcuaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 130958 | 0.67 | 0.945456 |
Target: 5'- cGCGCG-GGCGCGGGggcCGGUAccccggccgcccGGGCu -3' miRNA: 3'- -UGCGCuCUGCGCCUauaGCUAU------------CCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 120789 | 0.67 | 0.94724 |
Target: 5'- gACGCGGccGACGCGGAgcgcgccgcgcgCGAggugcuGGACg -3' miRNA: 3'- -UGCGCU--CUGCGCCUaua---------GCUau----CCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 130512 | 0.67 | 0.94724 |
Target: 5'- cGCGCGucucGGGCGCGGGcGUCGcGUacacgcccccgcgcgAGGGCg -3' miRNA: 3'- -UGCGC----UCUGCGCCUaUAGC-UA---------------UCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 51034 | 0.67 | 0.957896 |
Target: 5'- -gGUGGGAUGgGGAUGgugaCGGUGGuGGCg -3' miRNA: 3'- ugCGCUCUGCgCCUAUa---GCUAUC-CUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 30400 | 0.67 | 0.957896 |
Target: 5'- gACGCGAgucGACGgGGAgaggAagGAggggAGGACg -3' miRNA: 3'- -UGCGCU---CUGCgCCUa---UagCUa---UCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 11707 | 0.67 | 0.957896 |
Target: 5'- gGCGCGugcGGCGCGGAa--CGAgagGGGGg -3' miRNA: 3'- -UGCGCu--CUGCGCCUauaGCUa--UCCUg -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 78662 | 0.67 | 0.957896 |
Target: 5'- gGCGgcCGGGGCGCGGGUGcUGGacGGGCu -3' miRNA: 3'- -UGC--GCUCUGCGCCUAUaGCUauCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 90664 | 0.67 | 0.961213 |
Target: 5'- uGCGCGGGGCgGCGGGccgcuUGUCccccgcgGcgGGGGCg -3' miRNA: 3'- -UGCGCUCUG-CGCCU-----AUAG-------CuaUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 45046 | 0.67 | 0.96157 |
Target: 5'- aGCGUGGGGggUGUGGGgg--GAUGGGACg -3' miRNA: 3'- -UGCGCUCU--GCGCCUauagCUAUCCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 106668 | 0.67 | 0.96157 |
Target: 5'- uGCGCGAGGcCGCGGcgcUCGGcgcgccGGGCg -3' miRNA: 3'- -UGCGCUCU-GCGCCuauAGCUau----CCUG- -5' |
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29366 | 5' | -52.8 | NC_006151.1 | + | 63156 | 0.67 | 0.96157 |
Target: 5'- cGCGCGAcACGCGGua--CGGggccuUGGGGCg -3' miRNA: 3'- -UGCGCUcUGCGCCuauaGCU-----AUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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