miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 141015 1.09 0.005432
Target:  5'- cACGCGAGACGCGGAUAUCGAUAGGACu -3'
miRNA:   3'- -UGCGCUCUGCGCCUAUAGCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 49629 0.66 0.968239
Target:  5'- uGCGCGAGugG-GGGUGggcCGuggAGGAg -3'
miRNA:   3'- -UGCGCUCugCgCCUAUa--GCua-UCCUg -5'
29366 5' -52.8 NC_006151.1 + 97906 0.66 0.976635
Target:  5'- gACG-GAGGCGCGGAUgccGUCGccgccgAGGcCg -3'
miRNA:   3'- -UGCgCUCUGCGCCUA---UAGCua----UCCuG- -5'
29366 5' -52.8 NC_006151.1 + 3137 0.66 0.975877
Target:  5'- gGCGCGGGGCGCccucGGcgGgcUCGGcgcagagcuccucgUGGGGCa -3'
miRNA:   3'- -UGCGCUCUGCG----CCuaU--AGCU--------------AUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 97323 0.66 0.974041
Target:  5'- cGCGCGcuGCGCGGGUcGUUGAacAGGuACg -3'
miRNA:   3'- -UGCGCucUGCGCCUA-UAGCUa-UCC-UG- -5'
29366 5' -52.8 NC_006151.1 + 89116 0.66 0.974041
Target:  5'- uGCGCGAGAC-CGaGGg--CGGcGGGACc -3'
miRNA:   3'- -UGCGCUCUGcGC-CUauaGCUaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 21319 0.66 0.974041
Target:  5'- gGCGCGAGACGCccGGcg--CGGcGGGGg -3'
miRNA:   3'- -UGCGCUCUGCG--CCuauaGCUaUCCUg -5'
29366 5' -52.8 NC_006151.1 + 30166 0.66 0.973771
Target:  5'- aGCGCGGGAgGgCGGGUgagagagGUCGGggaggccGGGGCc -3'
miRNA:   3'- -UGCGCUCUgC-GCCUA-------UAGCUa------UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 141790 0.66 0.971245
Target:  5'- cCG-GGGACGCGGG--UCGGUcccgccccgAGGGCa -3'
miRNA:   3'- uGCgCUCUGCGCCUauAGCUA---------UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 102596 0.66 0.971245
Target:  5'- cCGCGAGucgcaGCGGGcgcUCGAgcGGGCg -3'
miRNA:   3'- uGCGCUCug---CGCCUau-AGCUauCCUG- -5'
29366 5' -52.8 NC_006151.1 + 17006 0.66 0.968239
Target:  5'- cGCGCGAacauGGCGCGGGUGgcc--GGGAUc -3'
miRNA:   3'- -UGCGCU----CUGCGCCUAUagcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 108759 0.66 0.976635
Target:  5'- gAUGCGAGcCGUGGAgAUCaaccucGGGACa -3'
miRNA:   3'- -UGCGCUCuGCGCCUaUAGcua---UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 127257 0.66 0.967612
Target:  5'- gGCGCGAcGCGCGGuggccggugagGUCGAUgacGGGuCg -3'
miRNA:   3'- -UGCGCUcUGCGCCua---------UAGCUA---UCCuG- -5'
29366 5' -52.8 NC_006151.1 + 113046 0.67 0.965016
Target:  5'- cUGCGcGGCgGCGGAg--CGcgAGGACg -3'
miRNA:   3'- uGCGCuCUG-CGCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 134998 0.67 0.965016
Target:  5'- gGCGCGucuuGGCGgGGGcg-CGggGGGGCa -3'
miRNA:   3'- -UGCGCu---CUGCgCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 27949 0.67 0.965016
Target:  5'- cGCGCGGGGUGgGGAgggaGggGGGACg -3'
miRNA:   3'- -UGCGCUCUGCgCCUauagCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 22268 0.67 0.965016
Target:  5'- uACGCG-GGCGgGGGgaagGUCGGcgcGGGCa -3'
miRNA:   3'- -UGCGCuCUGCgCCUa---UAGCUau-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 63156 0.67 0.96157
Target:  5'- cGCGCGAcACGCGGua--CGGggccuUGGGGCg -3'
miRNA:   3'- -UGCGCUcUGCGCCuauaGCU-----AUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 106668 0.67 0.96157
Target:  5'- uGCGCGAGGcCGCGGcgcUCGGcgcgccGGGCg -3'
miRNA:   3'- -UGCGCUCU-GCGCCuauAGCUau----CCUG- -5'
29366 5' -52.8 NC_006151.1 + 45046 0.67 0.96157
Target:  5'- aGCGUGGGGggUGUGGGgg--GAUGGGACg -3'
miRNA:   3'- -UGCGCUCU--GCGCCUauagCUAUCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.