miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 100766 0.72 0.779752
Target:  5'- uGCGCGAGGcCGCGGAccgCGuccuGGGCg -3'
miRNA:   3'- -UGCGCUCU-GCGCCUauaGCuau-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 97906 0.66 0.976635
Target:  5'- gACG-GAGGCGCGGAUgccGUCGccgccgAGGcCg -3'
miRNA:   3'- -UGCgCUCUGCGCCUA---UAGCua----UCCuG- -5'
29366 5' -52.8 NC_006151.1 + 97323 0.66 0.974041
Target:  5'- cGCGCGcuGCGCGGGUcGUUGAacAGGuACg -3'
miRNA:   3'- -UGCGCucUGCGCCUA-UAGCUa-UCC-UG- -5'
29366 5' -52.8 NC_006151.1 + 96979 0.68 0.923782
Target:  5'- gACGCG-GACGCGGcacggagggucagCGggGGGACa -3'
miRNA:   3'- -UGCGCuCUGCGCCuaua---------GCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 96874 0.7 0.850315
Target:  5'- gGCGCGGcgcGCGCGGGggcaUGAUGGGAUg -3'
miRNA:   3'- -UGCGCUc--UGCGCCUaua-GCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 96590 0.68 0.925992
Target:  5'- gGCGCGAGGCGCcGGGcgcgggcgcgccgacGUCGugcccgAGGGCg -3'
miRNA:   3'- -UGCGCUCUGCG-CCUa--------------UAGCua----UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 91544 0.71 0.832054
Target:  5'- uGCGCGAGguGCGCGGccagcggggCGAUGGcGGCg -3'
miRNA:   3'- -UGCGCUC--UGCGCCuaua-----GCUAUC-CUG- -5'
29366 5' -52.8 NC_006151.1 + 90664 0.67 0.961213
Target:  5'- uGCGCGGGGCgGCGGGccgcuUGUCccccgcgGcgGGGGCg -3'
miRNA:   3'- -UGCGCUCUG-CGCCU-----AUAG-------CuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 89174 0.72 0.789152
Target:  5'- -gGCG-GGCGCGGggGUCGGgggcggagAGGGCg -3'
miRNA:   3'- ugCGCuCUGCGCCuaUAGCUa-------UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 89116 0.66 0.974041
Target:  5'- uGCGCGAGAC-CGaGGg--CGGcGGGACc -3'
miRNA:   3'- -UGCGCUCUGcGC-CUauaGCUaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 78662 0.67 0.957896
Target:  5'- gGCGgcCGGGGCGCGGGUGcUGGacGGGCu -3'
miRNA:   3'- -UGC--GCUCUGCGCCUAUaGCUauCCUG- -5'
29366 5' -52.8 NC_006151.1 + 77907 0.69 0.907821
Target:  5'- -gGCGAGACGCGGcccacggccGUggUGGUgaAGGGCg -3'
miRNA:   3'- ugCGCUCUGCGCC---------UAuaGCUA--UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 77016 0.7 0.858289
Target:  5'- cCGCGAGcCGUGGAg--CGccAGGACg -3'
miRNA:   3'- uGCGCUCuGCGCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 63585 0.68 0.935946
Target:  5'- -gGCGuGGCGCGGGUucgCGAacacGGGCa -3'
miRNA:   3'- ugCGCuCUGCGCCUAua-GCUau--CCUG- -5'
29366 5' -52.8 NC_006151.1 + 63156 0.67 0.96157
Target:  5'- cGCGCGAcACGCGGua--CGGggccuUGGGGCg -3'
miRNA:   3'- -UGCGCUcUGCGCCuauaGCU-----AUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 61251 0.73 0.720797
Target:  5'- cGCGCGccacgaGGACGCGGcggcaggcgGUAUCGugcgGGGACg -3'
miRNA:   3'- -UGCGC------UCUGCGCC---------UAUAGCua--UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 51034 0.67 0.957896
Target:  5'- -gGUGGGAUGgGGAUGgugaCGGUGGuGGCg -3'
miRNA:   3'- ugCGCUCUGCgCCUAUa---GCUAUC-CUG- -5'
29366 5' -52.8 NC_006151.1 + 49629 0.66 0.968239
Target:  5'- uGCGCGAGugG-GGGUGggcCGuggAGGAg -3'
miRNA:   3'- -UGCGCUCugCgCCUAUa--GCua-UCCUg -5'
29366 5' -52.8 NC_006151.1 + 46011 0.73 0.720797
Target:  5'- gACGCccguggagGGGGCGaCGGAUGUCGAcgGGGAa -3'
miRNA:   3'- -UGCG--------CUCUGC-GCCUAUAGCUa-UCCUg -5'
29366 5' -52.8 NC_006151.1 + 45081 0.69 0.907821
Target:  5'- aGCGCGcaccGCGCGGuguggcGUCGAUGGGGu -3'
miRNA:   3'- -UGCGCuc--UGCGCCua----UAGCUAUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.