miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 45046 0.67 0.96157
Target:  5'- aGCGUGGGGggUGUGGGgg--GAUGGGACg -3'
miRNA:   3'- -UGCGCUCU--GCGCCUauagCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 42803 0.68 0.940824
Target:  5'- -gGCGGGACGCGucGAgGUCGuGUGGGGg -3'
miRNA:   3'- ugCGCUCUGCGC--CUaUAGC-UAUCCUg -5'
29366 5' -52.8 NC_006151.1 + 35358 0.7 0.88377
Target:  5'- gACGCGAGAggaaGUGGGcgagagaaaucccauUggccGUCGAUGGGGCa -3'
miRNA:   3'- -UGCGCUCUg---CGCCU---------------A----UAGCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 34619 0.81 0.313335
Target:  5'- aGCGCGAGGCGCGGGUGgggCGAccgcgGGGGu -3'
miRNA:   3'- -UGCGCUCUGCGCCUAUa--GCUa----UCCUg -5'
29366 5' -52.8 NC_006151.1 + 33963 0.75 0.617189
Target:  5'- -gGCGGGACGCGGcgcccgCGcgGGGACa -3'
miRNA:   3'- ugCGCUCUGCGCCuaua--GCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 33221 0.69 0.887994
Target:  5'- cACGCGGGGCGCcccggcgggcgGGAggggGUCcgggggaagGGUGGGGCg -3'
miRNA:   3'- -UGCGCUCUGCG-----------CCUa---UAG---------CUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 32101 0.68 0.940824
Target:  5'- gACGCggggaaGAGACGCGGAgagg---GGGACg -3'
miRNA:   3'- -UGCG------CUCUGCGCCUauagcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 31968 0.71 0.825182
Target:  5'- gACGCGGGACGUgcccgccgccugGGAgccggCGAggAGGACa -3'
miRNA:   3'- -UGCGCUCUGCG------------CCUaua--GCUa-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 31647 0.72 0.789152
Target:  5'- cACGCGGGcGCGCGGggAggGAggAGGGCg -3'
miRNA:   3'- -UGCGCUC-UGCGCCuaUagCUa-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 30400 0.67 0.957896
Target:  5'- gACGCGAgucGACGgGGAgaggAagGAggggAGGACg -3'
miRNA:   3'- -UGCGCU---CUGCgCCUa---UagCUa---UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 30166 0.66 0.973771
Target:  5'- aGCGCGGGAgGgCGGGUgagagagGUCGGggaggccGGGGCc -3'
miRNA:   3'- -UGCGCUCUgC-GCCUA-------UAGCUa------UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 29435 0.69 0.907821
Target:  5'- cCGCGGGGgGCGGcgGggaGAgGGGACg -3'
miRNA:   3'- uGCGCUCUgCGCCuaUag-CUaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 28107 0.71 0.825182
Target:  5'- -aGCGGGGCGCGGcuccucGUCGGcucGGGGCg -3'
miRNA:   3'- ugCGCUCUGCGCCua----UAGCUa--UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 27949 0.67 0.965016
Target:  5'- cGCGCGGGGUGgGGAgggaGggGGGACg -3'
miRNA:   3'- -UGCGCUCUGCgCCUauagCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 27442 0.75 0.596331
Target:  5'- gGCGCGgcGGACGCGGuggGUCG--GGGGCg -3'
miRNA:   3'- -UGCGC--UCUGCGCCua-UAGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 27296 0.76 0.534642
Target:  5'- cGCGCuuggGGGGCGUGGggGUCGAggcggGGGACg -3'
miRNA:   3'- -UGCG----CUCUGCGCCuaUAGCUa----UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 23005 0.7 0.850315
Target:  5'- cGCGCGgguggGGGCGCGGGgg-UGGUGGaGGCg -3'
miRNA:   3'- -UGCGC-----UCUGCGCCUauaGCUAUC-CUG- -5'
29366 5' -52.8 NC_006151.1 + 22268 0.67 0.965016
Target:  5'- uACGCG-GGCGgGGGgaagGUCGGcgcGGGCa -3'
miRNA:   3'- -UGCGCuCUGCgCCUa---UAGCUau-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 21498 0.69 0.913943
Target:  5'- cCGgGGGGCGCGGGcGUCaccGGGGCg -3'
miRNA:   3'- uGCgCUCUGCGCCUaUAGcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 21319 0.66 0.974041
Target:  5'- gGCGCGAGACGCccGGcg--CGGcGGGGg -3'
miRNA:   3'- -UGCGCUCUGCG--CCuauaGCUaUCCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.