miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 5' -52.8 NC_006151.1 + 141790 0.66 0.971245
Target:  5'- cCG-GGGACGCGGG--UCGGUcccgccccgAGGGCa -3'
miRNA:   3'- uGCgCUCUGCGCCUauAGCUA---------UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 141015 1.09 0.005432
Target:  5'- cACGCGAGACGCGGAUAUCGAUAGGACu -3'
miRNA:   3'- -UGCGCUCUGCGCCUAUAGCUAUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 139641 0.69 0.913943
Target:  5'- gGCGCc-GGCGCGGggGUCGcgGcGGGCg -3'
miRNA:   3'- -UGCGcuCUGCGCCuaUAGCuaU-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 134998 0.67 0.965016
Target:  5'- gGCGCGucuuGGCGgGGGcg-CGggGGGGCa -3'
miRNA:   3'- -UGCGCu---CUGCgCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 130958 0.67 0.945456
Target:  5'- cGCGCG-GGCGCGGGggcCGGUAccccggccgcccGGGCu -3'
miRNA:   3'- -UGCGCuCUGCGCCUauaGCUAU------------CCUG- -5'
29366 5' -52.8 NC_006151.1 + 130678 0.72 0.779752
Target:  5'- cCGCGGGGCGCggcgcaGGAUGUCcg-GGGGCc -3'
miRNA:   3'- uGCGCUCUGCG------CCUAUAGcuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 130512 0.67 0.94724
Target:  5'- cGCGCGucucGGGCGCGGGcGUCGcGUacacgcccccgcgcgAGGGCg -3'
miRNA:   3'- -UGCGC----UCUGCGCCUaUAGC-UA---------------UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 129969 0.7 0.873592
Target:  5'- cGCGCGAGcgcacgGCGCGGAaggccucGUCGucgGGGAUg -3'
miRNA:   3'- -UGCGCUC------UGCGCCUa------UAGCua-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 127381 0.68 0.939868
Target:  5'- cGCGgGGGugGCGGGggccgcggccgaGUCGAcGGGAg -3'
miRNA:   3'- -UGCgCUCugCGCCUa-----------UAGCUaUCCUg -5'
29366 5' -52.8 NC_006151.1 + 127257 0.66 0.967612
Target:  5'- gGCGCGAcGCGCGGuggccggugagGUCGAUgacGGGuCg -3'
miRNA:   3'- -UGCGCUcUGCGCCua---------UAGCUA---UCCuG- -5'
29366 5' -52.8 NC_006151.1 + 122958 0.75 0.627639
Target:  5'- cGCGgGGGGCGCGGAcgccggCGAcgGGGGCg -3'
miRNA:   3'- -UGCgCUCUGCGCCUaua---GCUa-UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 121413 0.69 0.907821
Target:  5'- gGCGCG-GGCGgGGAcGUCGc-GGGGCu -3'
miRNA:   3'- -UGCGCuCUGCgCCUaUAGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 120789 0.67 0.94724
Target:  5'- gACGCGGccGACGCGGAgcgcgccgcgcgCGAggugcuGGACg -3'
miRNA:   3'- -UGCGCU--CUGCGCCUaua---------GCUau----CCUG- -5'
29366 5' -52.8 NC_006151.1 + 113046 0.67 0.965016
Target:  5'- cUGCGcGGCgGCGGAg--CGcgAGGACg -3'
miRNA:   3'- uGCGCuCUG-CGCCUauaGCuaUCCUG- -5'
29366 5' -52.8 NC_006151.1 + 110790 0.68 0.935946
Target:  5'- cGCGCGGGGCuaggGCGGGgggCGA--GGGCa -3'
miRNA:   3'- -UGCGCUCUG----CGCCUauaGCUauCCUG- -5'
29366 5' -52.8 NC_006151.1 + 110210 0.71 0.816428
Target:  5'- uGCGgGAGACGCGGA---CGAcccucaAGGGCa -3'
miRNA:   3'- -UGCgCUCUGCGCCUauaGCUa-----UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 108759 0.66 0.976635
Target:  5'- gAUGCGAGcCGUGGAgAUCaaccucGGGACa -3'
miRNA:   3'- -UGCGCUCuGCGCCUaUAGcua---UCCUG- -5'
29366 5' -52.8 NC_006151.1 + 106668 0.67 0.96157
Target:  5'- uGCGCGAGGcCGCGGcgcUCGGcgcgccGGGCg -3'
miRNA:   3'- -UGCGCUCU-GCGCCuauAGCUau----CCUG- -5'
29366 5' -52.8 NC_006151.1 + 105795 0.83 0.246419
Target:  5'- uGCGCGAGGCGCGGAg--CGAcgcGGACg -3'
miRNA:   3'- -UGCGCUCUGCGCCUauaGCUau-CCUG- -5'
29366 5' -52.8 NC_006151.1 + 102596 0.66 0.971245
Target:  5'- cCGCGAGucgcaGCGGGcgcUCGAgcGGGCg -3'
miRNA:   3'- uGCGCUCug---CGCCUau-AGCUauCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.