Results 61 - 80 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 3' | -54.7 | NC_006151.1 | + | 78627 | 0.67 | 0.898114 |
Target: 5'- aACGCGCcGGACgCCgACGcgugcGAGCUGGu -3' miRNA: 3'- cUGCGCGaCCUGaGGgUGU-----UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 66881 | 0.67 | 0.898114 |
Target: 5'- gGGCGCGCccGGC-CCCGC---GCCGGa -3' miRNA: 3'- -CUGCGCGacCUGaGGGUGuuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 17278 | 0.67 | 0.897462 |
Target: 5'- gGGCGgGCUgauacggagGGGCUCCC-CGGGcuucgagccguccGCCGGg -3' miRNA: 3'- -CUGCgCGA---------CCUGAGGGuGUUU-------------UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 65362 | 0.68 | 0.891484 |
Target: 5'- aGACGCGCcccaGGGCgugCaCCACGugccCCGGg -3' miRNA: 3'- -CUGCGCGa---CCUGa--G-GGUGUuuu-GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 23897 | 0.68 | 0.89013 |
Target: 5'- cACGgGCUGGGCgucggucgcgggCCCgACGGGccGCCGGu -3' miRNA: 3'- cUGCgCGACCUGa-----------GGG-UGUUU--UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 39369 | 0.68 | 0.885319 |
Target: 5'- -uCGUGCUGGACaccaucgaggacuggCCCGCGGAcggcCCGGc -3' miRNA: 3'- cuGCGCGACCUGa--------------GGGUGUUUu---GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 104575 | 0.68 | 0.884622 |
Target: 5'- cGGCGCGC-GGACgUgCUGCA-GGCCGGc -3' miRNA: 3'- -CUGCGCGaCCUG-AgGGUGUuUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 139200 | 0.68 | 0.884622 |
Target: 5'- cGGgGCGCUGGAgCUCCUggcgGCGAcgcuGCCGc -3' miRNA: 3'- -CUgCGCGACCU-GAGGG----UGUUu---UGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 76822 | 0.68 | 0.884622 |
Target: 5'- gGGCGCGUaGuGGCggCCCGCGu--CCGGg -3' miRNA: 3'- -CUGCGCGaC-CUGa-GGGUGUuuuGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 13122 | 0.68 | 0.884622 |
Target: 5'- cACGCGC---GCUCCCGCGAcuucCCGGc -3' miRNA: 3'- cUGCGCGaccUGAGGGUGUUuu--GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 28312 | 0.68 | 0.884622 |
Target: 5'- cGGCGCGUccccgGGGCgCCCGCcc--CCGGg -3' miRNA: 3'- -CUGCGCGa----CCUGaGGGUGuuuuGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 116989 | 0.68 | 0.882519 |
Target: 5'- uGAgGCGCUGGugccgcagcaccacGCgcuccCCCGCGGGcCCGGg -3' miRNA: 3'- -CUgCGCGACC--------------UGa----GGGUGUUUuGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 51130 | 0.68 | 0.877535 |
Target: 5'- -uCGCGCaGGGCgUCCCggaGCAcgucGGGCCGGu -3' miRNA: 3'- cuGCGCGaCCUG-AGGG---UGU----UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 7666 | 0.68 | 0.877535 |
Target: 5'- cGCGCGCUccgaGGGCgCCC-CA--GCCGGu -3' miRNA: 3'- cUGCGCGA----CCUGaGGGuGUuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 78670 | 0.68 | 0.877535 |
Target: 5'- gGGCGCggguGCUGGACgggCuCUACGccGGCCGGg -3' miRNA: 3'- -CUGCG----CGACCUGa--G-GGUGUu-UUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 4616 | 0.68 | 0.870225 |
Target: 5'- gGGCGCG-UGGACccggcgCUgGCAGAACUGGu -3' miRNA: 3'- -CUGCGCgACCUGa-----GGgUGUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 103718 | 0.68 | 0.870225 |
Target: 5'- -cCGgaGCUGGGCUUCCugGAGccGCUGGc -3' miRNA: 3'- cuGCg-CGACCUGAGGGugUUU--UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 136821 | 0.68 | 0.8627 |
Target: 5'- cGACGCGCcgcgcGGGCUCUgcgaCGCGGccGCCGGc -3' miRNA: 3'- -CUGCGCGa----CCUGAGG----GUGUUu-UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 102452 | 0.68 | 0.8627 |
Target: 5'- gGACGCGCUcgaguccggGGGCUCCUACGcgcAGCucuCGGc -3' miRNA: 3'- -CUGCGCGA---------CCUGAGGGUGUu--UUG---GCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 121770 | 0.68 | 0.8627 |
Target: 5'- --aGCGCUGcGAC-CCCGCGguggugcgcGAGCUGGc -3' miRNA: 3'- cugCGCGAC-CUGaGGGUGU---------UUUGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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