Results 61 - 80 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 3' | -54.7 | NC_006151.1 | + | 65362 | 0.68 | 0.891484 |
Target: 5'- aGACGCGCcccaGGGCgugCaCCACGugccCCGGg -3' miRNA: 3'- -CUGCGCGa---CCUGa--G-GGUGUuuu-GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 17278 | 0.67 | 0.897462 |
Target: 5'- gGGCGgGCUgauacggagGGGCUCCC-CGGGcuucgagccguccGCCGGg -3' miRNA: 3'- -CUGCgCGA---------CCUGAGGGuGUUU-------------UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 78627 | 0.67 | 0.898114 |
Target: 5'- aACGCGCcGGACgCCgACGcgugcGAGCUGGu -3' miRNA: 3'- cUGCGCGaCCUGaGGgUGU-----UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 66881 | 0.67 | 0.898114 |
Target: 5'- gGGCGCGCccGGC-CCCGC---GCCGGa -3' miRNA: 3'- -CUGCGCGacCUGaGGGUGuuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 102856 | 0.67 | 0.898114 |
Target: 5'- cGGCGCGCaGcGCUUCCGCGugGCCa- -3' miRNA: 3'- -CUGCGCGaCcUGAGGGUGUuuUGGcc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 104824 | 0.67 | 0.898114 |
Target: 5'- cGGCGCGCgacGGcCUCgCCGCGgcgGAGgCGGa -3' miRNA: 3'- -CUGCGCGa--CCuGAG-GGUGU---UUUgGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 121059 | 0.67 | 0.903882 |
Target: 5'- -cCGCGCgUGGGCUucacgugCUCGCAGAcgggcggcggcGCCGGg -3' miRNA: 3'- cuGCGCG-ACCUGA-------GGGUGUUU-----------UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 64713 | 0.67 | 0.904511 |
Target: 5'- aGCGcCGCcaucCUCgCCGCAGAACCGGg -3' miRNA: 3'- cUGC-GCGaccuGAG-GGUGUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 134109 | 0.67 | 0.904511 |
Target: 5'- gGGCGgcUGCUGGugUgCCGgagucCGGGGCCGGa -3' miRNA: 3'- -CUGC--GCGACCugAgGGU-----GUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 117553 | 0.67 | 0.904511 |
Target: 5'- cGACGCGCcgcggccagaaGGGCUcCCCGCGGAggauggGCCGc -3' miRNA: 3'- -CUGCGCGa----------CCUGA-GGGUGUUU------UGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 69189 | 0.67 | 0.904511 |
Target: 5'- cGCGCGCcagGGGCUcgcuccggggCCCGC---GCCGGc -3' miRNA: 3'- cUGCGCGa--CCUGA----------GGGUGuuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 8329 | 0.67 | 0.904511 |
Target: 5'- gGGCGCGC-GGGCcucgaucgcgCCCGCcGGACgCGGa -3' miRNA: 3'- -CUGCGCGaCCUGa---------GGGUGuUUUG-GCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 32352 | 0.67 | 0.904511 |
Target: 5'- cGAgGCGCcgGGGCuuucuUCCCGgAccGCCGGg -3' miRNA: 3'- -CUgCGCGa-CCUG-----AGGGUgUuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 89102 | 0.67 | 0.904511 |
Target: 5'- -cCGCGg-GGGCUUCCugcGCGAGACCGa -3' miRNA: 3'- cuGCGCgaCCUGAGGG---UGUUUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 2587 | 0.67 | 0.910065 |
Target: 5'- cACGCGCUGGcgguaggcgcgcgGCggcaGCGGGACCGGg -3' miRNA: 3'- cUGCGCGACC-------------UGagggUGUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 38199 | 0.67 | 0.910065 |
Target: 5'- -gUGCGCuacagcgUGGACggggcccgcgCCCGCGAGGCCGc -3' miRNA: 3'- cuGCGCG-------ACCUGa---------GGGUGUUUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 45917 | 0.67 | 0.91067 |
Target: 5'- --aGCGCUGGACcCUgACGAGcACCGc -3' miRNA: 3'- cugCGCGACCUGaGGgUGUUU-UGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 122518 | 0.67 | 0.91067 |
Target: 5'- gGACGCGCuccUGGACgCgCACGAcguguuCCGGc -3' miRNA: 3'- -CUGCGCG---ACCUGaGgGUGUUuu----GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 124490 | 0.67 | 0.91067 |
Target: 5'- aACGCGCUcGGCaCCCGCG--GCUGGc -3' miRNA: 3'- cUGCGCGAcCUGaGGGUGUuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 129261 | 0.67 | 0.91067 |
Target: 5'- cGGCGCGa-GGcaucCUUCCACGAAGCgCGGc -3' miRNA: 3'- -CUGCGCgaCCu---GAGGGUGUUUUG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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