Results 61 - 80 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 3' | -54.7 | NC_006151.1 | + | 78627 | 0.67 | 0.898114 |
Target: 5'- aACGCGCcGGACgCCgACGcgugcGAGCUGGu -3' miRNA: 3'- cUGCGCGaCCUGaGGgUGU-----UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 78670 | 0.68 | 0.877535 |
Target: 5'- gGGCGCggguGCUGGACgggCuCUACGccGGCCGGg -3' miRNA: 3'- -CUGCG----CGACCUGa--G-GGUGUu-UUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 81781 | 0.69 | 0.813361 |
Target: 5'- gGACGCGCUcGGCgcgCCCGuCGAAGagcCCGGc -3' miRNA: 3'- -CUGCGCGAcCUGa--GGGU-GUUUU---GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 83360 | 0.66 | 0.932903 |
Target: 5'- cGGCGCGCgcgcGGGCgcgcaggCgCCGCAGGugcucguCCGGg -3' miRNA: 3'- -CUGCGCGa---CCUGa------G-GGUGUUUu------GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 85327 | 0.66 | 0.927175 |
Target: 5'- uACGCGCUGGagggccacagcguGCUCgCCGC---GCUGGc -3' miRNA: 3'- cUGCGCGACC-------------UGAG-GGUGuuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 85838 | 0.7 | 0.758055 |
Target: 5'- gGugGCGCUGGAg--CUGCAGAACCGc -3' miRNA: 3'- -CugCGCGACCUgagGGUGUUUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 86708 | 0.67 | 0.921713 |
Target: 5'- cGAC-CGCUGGgaGCUggucgcggcgcgcCgCCGCGAGGCCGGc -3' miRNA: 3'- -CUGcGCGACC--UGA-------------G-GGUGUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 87324 | 0.67 | 0.92227 |
Target: 5'- -cCGUGCcGGcGCUCCCGgGccuGCCGGg -3' miRNA: 3'- cuGCGCGaCC-UGAGGGUgUuu-UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 88126 | 0.67 | 0.91067 |
Target: 5'- aGCGgGCgGGcGCUCCgCACGuugagcAGGCCGGg -3' miRNA: 3'- cUGCgCGaCC-UGAGG-GUGU------UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 89102 | 0.67 | 0.904511 |
Target: 5'- -cCGCGg-GGGCUUCCugcGCGAGACCGa -3' miRNA: 3'- cuGCGCgaCCUGAGGG---UGUUUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 89514 | 0.66 | 0.932395 |
Target: 5'- uGugGCGCagcGGACguggUCCGCcucgagcagcgccGAGGCCGGu -3' miRNA: 3'- -CugCGCGa--CCUGa---GGGUG-------------UUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 90199 | 0.67 | 0.91067 |
Target: 5'- aGCGCGCa-GACggCCCACAGcaggacGCCGGc -3' miRNA: 3'- cUGCGCGacCUGa-GGGUGUUu-----UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 90284 | 0.7 | 0.786339 |
Target: 5'- cGACGaGCUGGAggCCCAUGcacgcggggauGAACCGGu -3' miRNA: 3'- -CUGCgCGACCUgaGGGUGU-----------UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 96329 | 0.66 | 0.933409 |
Target: 5'- cGCGCGCguagagcgccggguaGGcCUCCCGcCAGAACCa- -3' miRNA: 3'- cUGCGCGa--------------CCuGAGGGU-GUUUUGGcc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 99123 | 0.7 | 0.795499 |
Target: 5'- uGGCGCuGCUGGAC-CCCGgGgcgcAGGCCGu -3' miRNA: 3'- -CUGCG-CGACCUGaGGGUgU----UUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 99477 | 0.7 | 0.795499 |
Target: 5'- cGGCgGCGCUgGGGCUCCC-CGAGAa-GGg -3' miRNA: 3'- -CUG-CGCGA-CCUGAGGGuGUUUUggCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 100197 | 0.66 | 0.937857 |
Target: 5'- cGACcUGCUGGACUCgauggCCACG--GCCGcGg -3' miRNA: 3'- -CUGcGCGACCUGAG-----GGUGUuuUGGC-C- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 100671 | 0.75 | 0.486447 |
Target: 5'- cGGCGUGCUGGcGCUCgucgcgacgcuCCGCGAGACCuGGa -3' miRNA: 3'- -CUGCGCGACC-UGAG-----------GGUGUUUUGG-CC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 102406 | 0.69 | 0.838886 |
Target: 5'- cGGCGCGCgucGCgcggCCCGCGAAcgaggccaugcACCGGg -3' miRNA: 3'- -CUGCGCGaccUGa---GGGUGUUU-----------UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 102452 | 0.68 | 0.8627 |
Target: 5'- gGACGCGCUcgaguccggGGGCUCCUACGcgcAGCucuCGGc -3' miRNA: 3'- -CUGCGCGA---------CCUGAGGGUGUu--UUG---GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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