miRNA display CGI


Results 41 - 60 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 58328 0.72 0.668126
Target:  5'- cGGCGCGCcGGcCUCCgcguaggcgcgCGCGAAGCUGGu -3'
miRNA:   3'- -CUGCGCGaCCuGAGG-----------GUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 58477 0.66 0.937857
Target:  5'- cGACGaCGUcggcguccacgUGGAUgaugCCCGCGcgcGGGCCGGc -3'
miRNA:   3'- -CUGC-GCG-----------ACCUGa---GGGUGU---UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 59211 0.72 0.647584
Target:  5'- cACGCGCgUGGGC-CCCGgGAAcgucuGCCGGc -3'
miRNA:   3'- cUGCGCG-ACCUGaGGGUgUUU-----UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 59358 0.66 0.932903
Target:  5'- cGCGCGCacgGGGCg-CCGCGcgGCCGu -3'
miRNA:   3'- cUGCGCGa--CCUGagGGUGUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 60203 0.73 0.616697
Target:  5'- gGGCGUGaagaUGGGCUCgCCGCGcgcGCCGGa -3'
miRNA:   3'- -CUGCGCg---ACCUGAG-GGUGUuu-UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 60798 0.66 0.947045
Target:  5'- uGCaCGCUGGGCUCgCCGCGcAGCUc- -3'
miRNA:   3'- cUGcGCGACCUGAG-GGUGUuUUGGcc -5'
29367 3' -54.7 NC_006151.1 + 61899 0.66 0.947045
Target:  5'- cGugGUGCUGcuGAUggCCCACAAgcAGgCGGg -3'
miRNA:   3'- -CugCGCGAC--CUGa-GGGUGUU--UUgGCC- -5'
29367 3' -54.7 NC_006151.1 + 62257 0.66 0.947045
Target:  5'- uACGUGCaGGuGCUCCC-CAc-GCCGGc -3'
miRNA:   3'- cUGCGCGaCC-UGAGGGuGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 64468 0.69 0.843792
Target:  5'- cGGCGCGCgccgccgcggcggGGACgCCCGC-GGGCgCGGg -3'
miRNA:   3'- -CUGCGCGa------------CCUGaGGGUGuUUUG-GCC- -5'
29367 3' -54.7 NC_006151.1 + 64713 0.67 0.904511
Target:  5'- aGCGcCGCcaucCUCgCCGCAGAACCGGg -3'
miRNA:   3'- cUGC-GCGaccuGAG-GGUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 64789 0.66 0.947045
Target:  5'- gGGCGCgaGCUGGccacGCcCUCGCGgAAGCCGGc -3'
miRNA:   3'- -CUGCG--CGACC----UGaGGGUGU-UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 65362 0.68 0.891484
Target:  5'- aGACGCGCcccaGGGCgugCaCCACGugccCCGGg -3'
miRNA:   3'- -CUGCGCGa---CCUGa--G-GGUGUuuu-GGCC- -5'
29367 3' -54.7 NC_006151.1 + 65725 0.66 0.932903
Target:  5'- cGCGCgGCUGcGCgcggCCCA-GGAGCCGGg -3'
miRNA:   3'- cUGCG-CGACcUGa---GGGUgUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 66074 0.66 0.927708
Target:  5'- gGACGgcCGcCUGGGCUUCCACGcGGGCCu- -3'
miRNA:   3'- -CUGC--GC-GACCUGAGGGUGU-UUUGGcc -5'
29367 3' -54.7 NC_006151.1 + 66881 0.67 0.898114
Target:  5'- gGGCGCGCccGGC-CCCGC---GCCGGa -3'
miRNA:   3'- -CUGCGCGacCUGaGGGUGuuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 68258 0.69 0.822047
Target:  5'- aGACGCGCgcgGcGACggUCGCGGcGCCGGg -3'
miRNA:   3'- -CUGCGCGa--C-CUGagGGUGUUuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 69189 0.67 0.904511
Target:  5'- cGCGCGCcagGGGCUcgcuccggggCCCGC---GCCGGc -3'
miRNA:   3'- cUGCGCGa--CCUGA----------GGGUGuuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 76822 0.68 0.884622
Target:  5'- gGGCGCGUaGuGGCggCCCGCGu--CCGGg -3'
miRNA:   3'- -CUGCGCGaC-CUGa-GGGUGUuuuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 77107 0.69 0.838886
Target:  5'- gGGCGCgGC-GGGCgcgcgCCCACAAAgGCCGa -3'
miRNA:   3'- -CUGCG-CGaCCUGa----GGGUGUUU-UGGCc -5'
29367 3' -54.7 NC_006151.1 + 77603 0.71 0.718808
Target:  5'- uGACGgaGCUGGACcucugcggCCgCGCGGAGCUGGa -3'
miRNA:   3'- -CUGCg-CGACCUGa-------GG-GUGUUUUGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.