miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 103718 0.68 0.870225
Target:  5'- -cCGgaGCUGGGCUUCCugGAGccGCUGGc -3'
miRNA:   3'- cuGCg-CGACCUGAGGGugUUU--UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 103170 0.69 0.847024
Target:  5'- uGGCGCGCuucgacgccaUGGACgccgCCCugGcgGCCGc -3'
miRNA:   3'- -CUGCGCG----------ACCUGa---GGGugUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 102944 0.74 0.571643
Target:  5'- cGCGCGCUGGACgcggcgcccgccgCCCACGAcggcgcgcuGCUGGc -3'
miRNA:   3'- cUGCGCGACCUGa------------GGGUGUUu--------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 102856 0.67 0.898114
Target:  5'- cGGCGCGCaGcGCUUCCGCGugGCCa- -3'
miRNA:   3'- -CUGCGCGaCcUGAGGGUGUuuUGGcc -5'
29367 3' -54.7 NC_006151.1 + 102452 0.68 0.8627
Target:  5'- gGACGCGCUcgaguccggGGGCUCCUACGcgcAGCucuCGGc -3'
miRNA:   3'- -CUGCGCGA---------CCUGAGGGUGUu--UUG---GCC- -5'
29367 3' -54.7 NC_006151.1 + 102406 0.69 0.838886
Target:  5'- cGGCGCGCgucGCgcggCCCGCGAAcgaggccaugcACCGGg -3'
miRNA:   3'- -CUGCGCGaccUGa---GGGUGUUU-----------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 100671 0.75 0.486447
Target:  5'- cGGCGUGCUGGcGCUCgucgcgacgcuCCGCGAGACCuGGa -3'
miRNA:   3'- -CUGCGCGACC-UGAG-----------GGUGUUUUGG-CC- -5'
29367 3' -54.7 NC_006151.1 + 100197 0.66 0.937857
Target:  5'- cGACcUGCUGGACUCgauggCCACG--GCCGcGg -3'
miRNA:   3'- -CUGcGCGACCUGAG-----GGUGUuuUGGC-C- -5'
29367 3' -54.7 NC_006151.1 + 99477 0.7 0.795499
Target:  5'- cGGCgGCGCUgGGGCUCCC-CGAGAa-GGg -3'
miRNA:   3'- -CUG-CGCGA-CCUGAGGGuGUUUUggCC- -5'
29367 3' -54.7 NC_006151.1 + 99123 0.7 0.795499
Target:  5'- uGGCGCuGCUGGAC-CCCGgGgcgcAGGCCGu -3'
miRNA:   3'- -CUGCG-CGACCUGaGGGUgU----UUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 96329 0.66 0.933409
Target:  5'- cGCGCGCguagagcgccggguaGGcCUCCCGcCAGAACCa- -3'
miRNA:   3'- cUGCGCGa--------------CCuGAGGGU-GUUUUGGcc -5'
29367 3' -54.7 NC_006151.1 + 90284 0.7 0.786339
Target:  5'- cGACGaGCUGGAggCCCAUGcacgcggggauGAACCGGu -3'
miRNA:   3'- -CUGCgCGACCUgaGGGUGU-----------UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 90199 0.67 0.91067
Target:  5'- aGCGCGCa-GACggCCCACAGcaggacGCCGGc -3'
miRNA:   3'- cUGCGCGacCUGa-GGGUGUUu-----UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 89514 0.66 0.932395
Target:  5'- uGugGCGCagcGGACguggUCCGCcucgagcagcgccGAGGCCGGu -3'
miRNA:   3'- -CugCGCGa--CCUGa---GGGUG-------------UUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 89102 0.67 0.904511
Target:  5'- -cCGCGg-GGGCUUCCugcGCGAGACCGa -3'
miRNA:   3'- cuGCGCgaCCUGAGGG---UGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 88126 0.67 0.91067
Target:  5'- aGCGgGCgGGcGCUCCgCACGuugagcAGGCCGGg -3'
miRNA:   3'- cUGCgCGaCC-UGAGG-GUGU------UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 87324 0.67 0.92227
Target:  5'- -cCGUGCcGGcGCUCCCGgGccuGCCGGg -3'
miRNA:   3'- cuGCGCGaCC-UGAGGGUgUuu-UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 86708 0.67 0.921713
Target:  5'- cGAC-CGCUGGgaGCUggucgcggcgcgcCgCCGCGAGGCCGGc -3'
miRNA:   3'- -CUGcGCGACC--UGA-------------G-GGUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 85838 0.7 0.758055
Target:  5'- gGugGCGCUGGAg--CUGCAGAACCGc -3'
miRNA:   3'- -CugCGCGACCUgagGGUGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 85327 0.66 0.927175
Target:  5'- uACGCGCUGGagggccacagcguGCUCgCCGC---GCUGGc -3'
miRNA:   3'- cUGCGCGACC-------------UGAG-GGUGuuuUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.