miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 121770 0.68 0.8627
Target:  5'- --aGCGCUGcGAC-CCCGCGguggugcgcGAGCUGGc -3'
miRNA:   3'- cugCGCGAC-CUGaGGGUGU---------UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 121444 0.73 0.606415
Target:  5'- cGGCcuCGCUGGug-CCCGCGGAGCUGGg -3'
miRNA:   3'- -CUGc-GCGACCugaGGGUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 121059 0.67 0.903882
Target:  5'- -cCGCGCgUGGGCUucacgugCUCGCAGAcgggcggcggcGCCGGg -3'
miRNA:   3'- cuGCGCG-ACCUGA-------GGGUGUUU-----------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 120311 0.69 0.821186
Target:  5'- cGACGgGCUcgggcagccucucGGACgccgcgcgcgCCCGCGugGCCGGg -3'
miRNA:   3'- -CUGCgCGA-------------CCUGa---------GGGUGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 119004 0.69 0.812484
Target:  5'- -cCGCGCUGGACgacuggCCCGugcucucCGAGGCgGGc -3'
miRNA:   3'- cuGCGCGACCUGa-----GGGU-------GUUUUGgCC- -5'
29367 3' -54.7 NC_006151.1 + 118740 0.68 0.854964
Target:  5'- uACGUGCUGGGC-CCgGCG--GCCGu -3'
miRNA:   3'- cUGCGCGACCUGaGGgUGUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 118162 0.66 0.937857
Target:  5'- uGGCGcCGCUGGuGCgcggCCUgaccguCGAGGCCGGc -3'
miRNA:   3'- -CUGC-GCGACC-UGa---GGGu-----GUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 117553 0.67 0.904511
Target:  5'- cGACGCGCcgcggccagaaGGGCUcCCCGCGGAggauggGCCGc -3'
miRNA:   3'- -CUGCGCGa----------CCUGA-GGGUGUUU------UGGCc -5'
29367 3' -54.7 NC_006151.1 + 116989 0.68 0.882519
Target:  5'- uGAgGCGCUGGugccgcagcaccacGCgcuccCCCGCGGGcCCGGg -3'
miRNA:   3'- -CUgCGCGACC--------------UGa----GGGUGUUUuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 114433 0.7 0.800924
Target:  5'- cGCGUGCUGGACcgCCUGCucggggccugcGCCGGc -3'
miRNA:   3'- cUGCGCGACCUGa-GGGUGuuu--------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 113308 0.66 0.94257
Target:  5'- cGCGCGgUGGACg-CCAC---GCUGGg -3'
miRNA:   3'- cUGCGCgACCUGagGGUGuuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 112621 0.66 0.927708
Target:  5'- --gGCGCUGGACgagCCCugccGCGuguGCCGc -3'
miRNA:   3'- cugCGCGACCUGa--GGG----UGUuu-UGGCc -5'
29367 3' -54.7 NC_006151.1 + 110009 0.71 0.748389
Target:  5'- aGGCGCccgaGCUGGAC-CCCugGGGcCUGGa -3'
miRNA:   3'- -CUGCG----CGACCUGaGGGugUUUuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 107576 0.66 0.94257
Target:  5'- -cCGCGgaGcuGACUCCCGCcgccAAGCUGGc -3'
miRNA:   3'- cuGCGCgaC--CUGAGGGUGu---UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 106340 0.69 0.822047
Target:  5'- cGCGCGCUGGACgcgguggaCACGcuGGACgCGGg -3'
miRNA:   3'- cUGCGCGACCUGagg-----GUGU--UUUG-GCC- -5'
29367 3' -54.7 NC_006151.1 + 106165 0.72 0.678357
Target:  5'- cGGgGCGCUGGACcgcgucgcgcaCCCGCcgcuGGAGCCGGc -3'
miRNA:   3'- -CUgCGCGACCUGa----------GGGUG----UUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 105451 0.74 0.574695
Target:  5'- cGGCGCGCgccgGGGCccugggcgacuucUUCCGCGAcGCCGGu -3'
miRNA:   3'- -CUGCGCGa---CCUG-------------AGGGUGUUuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 104824 0.67 0.898114
Target:  5'- cGGCGCGCgacGGcCUCgCCGCGgcgGAGgCGGa -3'
miRNA:   3'- -CUGCGCGa--CCuGAG-GGUGU---UUUgGCC- -5'
29367 3' -54.7 NC_006151.1 + 104575 0.68 0.884622
Target:  5'- cGGCGCGC-GGACgUgCUGCA-GGCCGGc -3'
miRNA:   3'- -CUGCGCGaCCUG-AgGGUGUuUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 104409 0.68 0.8627
Target:  5'- cGGCGUGCUGG---CCCGCGccgccGCCGGc -3'
miRNA:   3'- -CUGCGCGACCugaGGGUGUuu---UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.