Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 3' | -54.7 | NC_006151.1 | + | 27327 | 0.69 | 0.822047 |
Target: 5'- gGACGgGg-GGcuGCUCCC-CGGGACCGGg -3' miRNA: 3'- -CUGCgCgaCC--UGAGGGuGUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 28312 | 0.68 | 0.884622 |
Target: 5'- cGGCGCGUccccgGGGCgCCCGCcc--CCGGg -3' miRNA: 3'- -CUGCGCGa----CCUGaGGGUGuuuuGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 28845 | 0.66 | 0.937857 |
Target: 5'- gGACGCGggcccGGCUCCCcCAuuGGCCGGc -3' miRNA: 3'- -CUGCGCgac--CUGAGGGuGUu-UUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 29493 | 0.66 | 0.929815 |
Target: 5'- gGGCGCGCUGGcCUCgagccagcccuCCGCGgcgaugaagacggauGAGCgGGg -3' miRNA: 3'- -CUGCGCGACCuGAG-----------GGUGU---------------UUUGgCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 31967 | 0.69 | 0.813361 |
Target: 5'- gGACGCG--GGACgugCCCGCcgccugGGAGCCGGc -3' miRNA: 3'- -CUGCGCgaCCUGa--GGGUG------UUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 32352 | 0.67 | 0.904511 |
Target: 5'- cGAgGCGCcgGGGCuuucuUCCCGgAccGCCGGg -3' miRNA: 3'- -CUgCGCGa-CCUG-----AGGGUgUuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 35195 | 0.66 | 0.939771 |
Target: 5'- aGGCGCGCgGGAgacgcCUCCgCGCGcccauuggcccgggcGAGCCGa -3' miRNA: 3'- -CUGCGCGaCCU-----GAGG-GUGU---------------UUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 36874 | 0.68 | 0.854964 |
Target: 5'- gGACG-GCgGGGCgccCCCGCAGAgacagccccGCCGGc -3' miRNA: 3'- -CUGCgCGaCCUGa--GGGUGUUU---------UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 37407 | 0.76 | 0.43071 |
Target: 5'- cGGCgGCGCcggGGACUCCCGCGAGGggcuCUGGg -3' miRNA: 3'- -CUG-CGCGa--CCUGAGGGUGUUUU----GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 37866 | 0.69 | 0.847024 |
Target: 5'- -cCGCGCcgcGGACcCCCGC---GCCGGg -3' miRNA: 3'- cuGCGCGa--CCUGaGGGUGuuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 38199 | 0.67 | 0.910065 |
Target: 5'- -gUGCGCuacagcgUGGACggggcccgcgCCCGCGAGGCCGc -3' miRNA: 3'- cuGCGCG-------ACCUGa---------GGGUGUUUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 39206 | 0.69 | 0.830558 |
Target: 5'- uGCaCGCcGGACUCgCACGccuGGGCCGGg -3' miRNA: 3'- cUGcGCGaCCUGAGgGUGU---UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 39369 | 0.68 | 0.885319 |
Target: 5'- -uCGUGCUGGACaccaucgaggacuggCCCGCGGAcggcCCGGc -3' miRNA: 3'- cuGCGCGACCUGa--------------GGGUGUUUu---GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 39470 | 0.66 | 0.945727 |
Target: 5'- -gUGCGCUGGcccgggugccgcgaGCUCCgCGCGGccguGCUGGa -3' miRNA: 3'- cuGCGCGACC--------------UGAGG-GUGUUu---UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 45917 | 0.67 | 0.91067 |
Target: 5'- --aGCGCUGGACcCUgACGAGcACCGc -3' miRNA: 3'- cugCGCGACCUGaGGgUGUUU-UGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 50868 | 0.67 | 0.916591 |
Target: 5'- -cCGCGCccccGGAC-CCCGuccCGGGGCCGGc -3' miRNA: 3'- cuGCGCGa---CCUGaGGGU---GUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 51130 | 0.68 | 0.877535 |
Target: 5'- -uCGCGCaGGGCgUCCCggaGCAcgucGGGCCGGu -3' miRNA: 3'- cuGCGCGaCCUG-AGGG---UGU----UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 52371 | 0.67 | 0.91067 |
Target: 5'- cGGCGCGCccccGGGg-CCCGCGGGGgCGGc -3' miRNA: 3'- -CUGCGCGa---CCUgaGGGUGUUUUgGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 54354 | 0.71 | 0.748389 |
Target: 5'- cGGCGCGCUacgaGGACguggCCCG--GGACUGGa -3' miRNA: 3'- -CUGCGCGA----CCUGa---GGGUguUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 54704 | 0.66 | 0.932903 |
Target: 5'- aGCGUGCUGGGCcagggCCUggACGAGgugGCCGa -3' miRNA: 3'- cUGCGCGACCUGa----GGG--UGUUU---UGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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