miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 27327 0.69 0.822047
Target:  5'- gGACGgGg-GGcuGCUCCC-CGGGACCGGg -3'
miRNA:   3'- -CUGCgCgaCC--UGAGGGuGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 28312 0.68 0.884622
Target:  5'- cGGCGCGUccccgGGGCgCCCGCcc--CCGGg -3'
miRNA:   3'- -CUGCGCGa----CCUGaGGGUGuuuuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 28845 0.66 0.937857
Target:  5'- gGACGCGggcccGGCUCCCcCAuuGGCCGGc -3'
miRNA:   3'- -CUGCGCgac--CUGAGGGuGUu-UUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 29493 0.66 0.929815
Target:  5'- gGGCGCGCUGGcCUCgagccagcccuCCGCGgcgaugaagacggauGAGCgGGg -3'
miRNA:   3'- -CUGCGCGACCuGAG-----------GGUGU---------------UUUGgCC- -5'
29367 3' -54.7 NC_006151.1 + 31967 0.69 0.813361
Target:  5'- gGACGCG--GGACgugCCCGCcgccugGGAGCCGGc -3'
miRNA:   3'- -CUGCGCgaCCUGa--GGGUG------UUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 32352 0.67 0.904511
Target:  5'- cGAgGCGCcgGGGCuuucuUCCCGgAccGCCGGg -3'
miRNA:   3'- -CUgCGCGa-CCUG-----AGGGUgUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 35195 0.66 0.939771
Target:  5'- aGGCGCGCgGGAgacgcCUCCgCGCGcccauuggcccgggcGAGCCGa -3'
miRNA:   3'- -CUGCGCGaCCU-----GAGG-GUGU---------------UUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 36874 0.68 0.854964
Target:  5'- gGACG-GCgGGGCgccCCCGCAGAgacagccccGCCGGc -3'
miRNA:   3'- -CUGCgCGaCCUGa--GGGUGUUU---------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 37407 0.76 0.43071
Target:  5'- cGGCgGCGCcggGGACUCCCGCGAGGggcuCUGGg -3'
miRNA:   3'- -CUG-CGCGa--CCUGAGGGUGUUUU----GGCC- -5'
29367 3' -54.7 NC_006151.1 + 37866 0.69 0.847024
Target:  5'- -cCGCGCcgcGGACcCCCGC---GCCGGg -3'
miRNA:   3'- cuGCGCGa--CCUGaGGGUGuuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 38199 0.67 0.910065
Target:  5'- -gUGCGCuacagcgUGGACggggcccgcgCCCGCGAGGCCGc -3'
miRNA:   3'- cuGCGCG-------ACCUGa---------GGGUGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 39206 0.69 0.830558
Target:  5'- uGCaCGCcGGACUCgCACGccuGGGCCGGg -3'
miRNA:   3'- cUGcGCGaCCUGAGgGUGU---UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 39369 0.68 0.885319
Target:  5'- -uCGUGCUGGACaccaucgaggacuggCCCGCGGAcggcCCGGc -3'
miRNA:   3'- cuGCGCGACCUGa--------------GGGUGUUUu---GGCC- -5'
29367 3' -54.7 NC_006151.1 + 39470 0.66 0.945727
Target:  5'- -gUGCGCUGGcccgggugccgcgaGCUCCgCGCGGccguGCUGGa -3'
miRNA:   3'- cuGCGCGACC--------------UGAGG-GUGUUu---UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 45917 0.67 0.91067
Target:  5'- --aGCGCUGGACcCUgACGAGcACCGc -3'
miRNA:   3'- cugCGCGACCUGaGGgUGUUU-UGGCc -5'
29367 3' -54.7 NC_006151.1 + 50868 0.67 0.916591
Target:  5'- -cCGCGCccccGGAC-CCCGuccCGGGGCCGGc -3'
miRNA:   3'- cuGCGCGa---CCUGaGGGU---GUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 51130 0.68 0.877535
Target:  5'- -uCGCGCaGGGCgUCCCggaGCAcgucGGGCCGGu -3'
miRNA:   3'- cuGCGCGaCCUG-AGGG---UGU----UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 52371 0.67 0.91067
Target:  5'- cGGCGCGCccccGGGg-CCCGCGGGGgCGGc -3'
miRNA:   3'- -CUGCGCGa---CCUgaGGGUGUUUUgGCC- -5'
29367 3' -54.7 NC_006151.1 + 54354 0.71 0.748389
Target:  5'- cGGCGCGCUacgaGGACguggCCCG--GGACUGGa -3'
miRNA:   3'- -CUGCGCGA----CCUGa---GGGUguUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 54704 0.66 0.932903
Target:  5'- aGCGUGCUGGGCcagggCCUggACGAGgugGCCGa -3'
miRNA:   3'- cUGCGCGACCUGa----GGG--UGUUU---UGGCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.