Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 3' | -54.7 | NC_006151.1 | + | 64789 | 0.66 | 0.947045 |
Target: 5'- gGGCGCgaGCUGGccacGCcCUCGCGgAAGCCGGc -3' miRNA: 3'- -CUGCG--CGACC----UGaGGGUGU-UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 62257 | 0.66 | 0.947045 |
Target: 5'- uACGUGCaGGuGCUCCC-CAc-GCCGGc -3' miRNA: 3'- cUGCGCGaCC-UGAGGGuGUuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 3833 | 0.66 | 0.947045 |
Target: 5'- uGGCgGgGCUGGAgggCCCG--GAGCCGGg -3' miRNA: 3'- -CUG-CgCGACCUga-GGGUguUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 60798 | 0.66 | 0.947045 |
Target: 5'- uGCaCGCUGGGCUCgCCGCGcAGCUc- -3' miRNA: 3'- cUGcGCGACCUGAG-GGUGUuUUGGcc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 39470 | 0.66 | 0.945727 |
Target: 5'- -gUGCGCUGGcccgggugccgcgaGCUCCgCGCGGccguGCUGGa -3' miRNA: 3'- cuGCGCGACC--------------UGAGG-GUGUUu---UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 22184 | 0.66 | 0.94257 |
Target: 5'- gGGCGCGUgugguaGACgUCCGCGGGGCCGa -3' miRNA: 3'- -CUGCGCGac----CUGaGGGUGUUUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 113308 | 0.66 | 0.94257 |
Target: 5'- cGCGCGgUGGACg-CCAC---GCUGGg -3' miRNA: 3'- cUGCGCgACCUGagGGUGuuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 107576 | 0.66 | 0.94257 |
Target: 5'- -cCGCGgaGcuGACUCCCGCcgccAAGCUGGc -3' miRNA: 3'- cuGCGCgaC--CUGAGGGUGu---UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 118162 | 0.66 | 0.937857 |
Target: 5'- uGGCGcCGCUGGuGCgcggCCUgaccguCGAGGCCGGc -3' miRNA: 3'- -CUGC-GCGACC-UGa---GGGu-----GUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 131027 | 0.66 | 0.937857 |
Target: 5'- aGCGgGUgaaGGcCUCCCGCucgucGGGGCCGGa -3' miRNA: 3'- cUGCgCGa--CCuGAGGGUG-----UUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 28845 | 0.66 | 0.937857 |
Target: 5'- gGACGCGggcccGGCUCCCcCAuuGGCCGGc -3' miRNA: 3'- -CUGCGCgac--CUGAGGGuGUu-UUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 58477 | 0.66 | 0.937857 |
Target: 5'- cGACGaCGUcggcguccacgUGGAUgaugCCCGCGcgcGGGCCGGc -3' miRNA: 3'- -CUGC-GCG-----------ACCUGa---GGGUGU---UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 127467 | 0.66 | 0.939771 |
Target: 5'- --aGCGCUGGGCggcgcggaacgagCCGCGGAccccgcGCCGGa -3' miRNA: 3'- cugCGCGACCUGag-----------GGUGUUU------UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 35195 | 0.66 | 0.939771 |
Target: 5'- aGGCGCGCgGGAgacgcCUCCgCGCGcccauuggcccgggcGAGCCGa -3' miRNA: 3'- -CUGCGCGaCCU-----GAGG-GUGU---------------UUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 3946 | 0.66 | 0.94257 |
Target: 5'- --gGCGC-GGGCUCC-GCGGGcCCGGg -3' miRNA: 3'- cugCGCGaCCUGAGGgUGUUUuGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 24056 | 0.67 | 0.91601 |
Target: 5'- aGAUGCGCaaaggugUGuGugUCCUACcgcucGGAGCCGGc -3' miRNA: 3'- -CUGCGCG-------AC-CugAGGGUG-----UUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 86708 | 0.67 | 0.921713 |
Target: 5'- cGAC-CGCUGGgaGCUggucgcggcgcgcCgCCGCGAGGCCGGc -3' miRNA: 3'- -CUGcGCGACC--UGA-------------G-GGUGUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 16980 | 0.67 | 0.921713 |
Target: 5'- cGugGCGCcaggagcgguugUGGAC-CCgCGCGAAcauggcgcgggugGCCGGg -3' miRNA: 3'- -CugCGCG------------ACCUGaGG-GUGUUU-------------UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 50868 | 0.67 | 0.916591 |
Target: 5'- -cCGCGCccccGGAC-CCCGuccCGGGGCCGGc -3' miRNA: 3'- cuGCGCGa---CCUGaGGGU---GUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 14221 | 0.67 | 0.916591 |
Target: 5'- cGACGauCGCgGGAC-CCgACGGuACCGGa -3' miRNA: 3'- -CUGC--GCGaCCUGaGGgUGUUuUGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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