miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 19277 0.65 0.950036
Target:  5'- uGGCGCGCgGGGC-CCaccggggccagcggCGCGGgcGGCCGGu -3'
miRNA:   3'- -CUGCGCGaCCUGaGG--------------GUGUU--UUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 127467 0.66 0.939771
Target:  5'- --aGCGCUGGGCggcgcggaacgagCCGCGGAccccgcGCCGGa -3'
miRNA:   3'- cugCGCGACCUGag-----------GGUGUUU------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 58477 0.66 0.937857
Target:  5'- cGACGaCGUcggcguccacgUGGAUgaugCCCGCGcgcGGGCCGGc -3'
miRNA:   3'- -CUGC-GCG-----------ACCUGa---GGGUGU---UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 28845 0.66 0.937857
Target:  5'- gGACGCGggcccGGCUCCCcCAuuGGCCGGc -3'
miRNA:   3'- -CUGCGCgac--CUGAGGGuGUu-UUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 131027 0.66 0.937857
Target:  5'- aGCGgGUgaaGGcCUCCCGCucgucGGGGCCGGa -3'
miRNA:   3'- cUGCgCGa--CCuGAGGGUG-----UUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 118162 0.66 0.937857
Target:  5'- uGGCGcCGCUGGuGCgcggCCUgaccguCGAGGCCGGc -3'
miRNA:   3'- -CUGC-GCGACC-UGa---GGGu-----GUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 100197 0.66 0.937857
Target:  5'- cGACcUGCUGGACUCgauggCCACG--GCCGcGg -3'
miRNA:   3'- -CUGcGCGACCUGAG-----GGUGUuuUGGC-C- -5'
29367 3' -54.7 NC_006151.1 + 140183 0.66 0.937857
Target:  5'- uGCGCacGCUGGAC-CCCAUcguGGCCa- -3'
miRNA:   3'- cUGCG--CGACCUGaGGGUGuu-UUGGcc -5'
29367 3' -54.7 NC_006151.1 + 136415 0.66 0.937857
Target:  5'- uACGCGCgGGGC-CCCGCGGcggcgcacGCCGc -3'
miRNA:   3'- cUGCGCGaCCUGaGGGUGUUu-------UGGCc -5'
29367 3' -54.7 NC_006151.1 + 35195 0.66 0.939771
Target:  5'- aGGCGCGCgGGAgacgcCUCCgCGCGcccauuggcccgggcGAGCCGa -3'
miRNA:   3'- -CUGCGCGaCCU-----GAGG-GUGU---------------UUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 3946 0.66 0.94257
Target:  5'- --gGCGC-GGGCUCC-GCGGGcCCGGg -3'
miRNA:   3'- cugCGCGaCCUGAGGgUGUUUuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 107576 0.66 0.94257
Target:  5'- -cCGCGgaGcuGACUCCCGCcgccAAGCUGGc -3'
miRNA:   3'- cuGCGCgaC--CUGAGGGUGu---UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 64789 0.66 0.947045
Target:  5'- gGGCGCgaGCUGGccacGCcCUCGCGgAAGCCGGc -3'
miRNA:   3'- -CUGCG--CGACC----UGaGGGUGU-UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 62257 0.66 0.947045
Target:  5'- uACGUGCaGGuGCUCCC-CAc-GCCGGc -3'
miRNA:   3'- cUGCGCGaCC-UGAGGGuGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 3833 0.66 0.947045
Target:  5'- uGGCgGgGCUGGAgggCCCG--GAGCCGGg -3'
miRNA:   3'- -CUG-CgCGACCUga-GGGUguUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 60798 0.66 0.947045
Target:  5'- uGCaCGCUGGGCUCgCCGCGcAGCUc- -3'
miRNA:   3'- cUGcGCGACCUGAG-GGUGUuUUGGcc -5'
29367 3' -54.7 NC_006151.1 + 39470 0.66 0.945727
Target:  5'- -gUGCGCUGGcccgggugccgcgaGCUCCgCGCGGccguGCUGGa -3'
miRNA:   3'- cuGCGCGACC--------------UGAGG-GUGUUu---UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 22184 0.66 0.94257
Target:  5'- gGGCGCGUgugguaGACgUCCGCGGGGCCGa -3'
miRNA:   3'- -CUGCGCGac----CUGaGGGUGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 113308 0.66 0.94257
Target:  5'- cGCGCGgUGGACg-CCAC---GCUGGg -3'
miRNA:   3'- cUGCGCgACCUGagGGUGuuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 22794 0.66 0.937857
Target:  5'- cACGUGCUGGGCcgucUCCC-CG--GCCGu -3'
miRNA:   3'- cUGCGCGACCUG----AGGGuGUuuUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.