miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 140472 1.09 0.003644
Target:  5'- gGACGCGCUGGACUCCCACAAAACCGGc -3'
miRNA:   3'- -CUGCGCGACCUGAGGGUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 37407 0.76 0.43071
Target:  5'- cGGCgGCGCcggGGACUCCCGCGAGGggcuCUGGg -3'
miRNA:   3'- -CUG-CGCGa--CCUGAGGGUGUUUU----GGCC- -5'
29367 3' -54.7 NC_006151.1 + 100671 0.75 0.486447
Target:  5'- cGGCGUGCUGGcGCUCgucgcgacgcuCCGCGAGACCuGGa -3'
miRNA:   3'- -CUGCGCGACC-UGAG-----------GGUGUUUUGG-CC- -5'
29367 3' -54.7 NC_006151.1 + 129127 0.75 0.515572
Target:  5'- aGGCGCGCUGGGCg-CCAaAGAgcGCCGGc -3'
miRNA:   3'- -CUGCGCGACCUGagGGUgUUU--UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 102944 0.74 0.571643
Target:  5'- cGCGCGCUGGACgcggcgcccgccgCCCACGAcggcgcgcuGCUGGc -3'
miRNA:   3'- cUGCGCGACCUGa------------GGGUGUUu--------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 105451 0.74 0.574695
Target:  5'- cGGCGCGCgccgGGGCccugggcgacuucUUCCGCGAcGCCGGu -3'
miRNA:   3'- -CUGCGCGa---CCUG-------------AGGGUGUUuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 121444 0.73 0.606415
Target:  5'- cGGCcuCGCUGGug-CCCGCGGAGCUGGg -3'
miRNA:   3'- -CUGc-GCGACCugaGGGUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 60203 0.73 0.616697
Target:  5'- gGGCGUGaagaUGGGCUCgCCGCGcgcGCCGGa -3'
miRNA:   3'- -CUGCGCg---ACCUGAG-GGUGUuu-UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 21520 0.72 0.647584
Target:  5'- gGGCGgGCUcGGGCUUCgGcCGGGGCCGGg -3'
miRNA:   3'- -CUGCgCGA-CCUGAGGgU-GUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 59211 0.72 0.647584
Target:  5'- cACGCGCgUGGGC-CCCGgGAAcgucuGCCGGc -3'
miRNA:   3'- cUGCGCG-ACCUGaGGGUgUUU-----UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 58328 0.72 0.668126
Target:  5'- cGGCGCGCcGGcCUCCgcguaggcgcgCGCGAAGCUGGu -3'
miRNA:   3'- -CUGCGCGaCCuGAGG-----------GUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 106165 0.72 0.678357
Target:  5'- cGGgGCGCUGGACcgcgucgcgcaCCCGCcgcuGGAGCCGGc -3'
miRNA:   3'- -CUgCGCGACCUGa----------GGGUG----UUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 135772 0.71 0.707779
Target:  5'- cGGCGCcggGCUGGACgaggccuUCUCACu--GCCGGg -3'
miRNA:   3'- -CUGCG---CGACCUG-------AGGGUGuuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 77603 0.71 0.718808
Target:  5'- uGACGgaGCUGGACcucugcggCCgCGCGGAGCUGGa -3'
miRNA:   3'- -CUGCg-CGACCUGa-------GG-GUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 110009 0.71 0.748389
Target:  5'- aGGCGCccgaGCUGGAC-CCCugGGGcCUGGa -3'
miRNA:   3'- -CUGCG----CGACCUGaGGGugUUUuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 3895 0.71 0.748389
Target:  5'- --gGCGCUGGGa--CgACGAGGCCGGg -3'
miRNA:   3'- cugCGCGACCUgagGgUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 54354 0.71 0.748389
Target:  5'- cGGCGCGCUacgaGGACguggCCCG--GGACUGGa -3'
miRNA:   3'- -CUGCGCGA----CCUGa---GGGUguUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 85838 0.7 0.758055
Target:  5'- gGugGCGCUGGAg--CUGCAGAACCGc -3'
miRNA:   3'- -CugCGCGACCUgagGGUGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 137013 0.7 0.758055
Target:  5'- --gGCGCUGGGCgCCCugcuCGGccuGCCGGa -3'
miRNA:   3'- cugCGCGACCUGaGGGu---GUUu--UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 13681 0.7 0.777039
Target:  5'- gGACGCGCcggccaaugcGGGCUCCCGgGAcGCgGGc -3'
miRNA:   3'- -CUGCGCGa---------CCUGAGGGUgUUuUGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.