miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 2587 0.67 0.910065
Target:  5'- cACGCGCUGGcgguaggcgcgcgGCggcaGCGGGACCGGg -3'
miRNA:   3'- cUGCGCGACC-------------UGagggUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 3833 0.66 0.947045
Target:  5'- uGGCgGgGCUGGAgggCCCG--GAGCCGGg -3'
miRNA:   3'- -CUG-CgCGACCUga-GGGUguUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 3895 0.71 0.748389
Target:  5'- --gGCGCUGGGa--CgACGAGGCCGGg -3'
miRNA:   3'- cugCGCGACCUgagGgUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 3946 0.66 0.94257
Target:  5'- --gGCGC-GGGCUCC-GCGGGcCCGGg -3'
miRNA:   3'- cugCGCGaCCUGAGGgUGUUUuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 4616 0.68 0.870225
Target:  5'- gGGCGCG-UGGACccggcgCUgGCAGAACUGGu -3'
miRNA:   3'- -CUGCGCgACCUGa-----GGgUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 7666 0.68 0.877535
Target:  5'- cGCGCGCUccgaGGGCgCCC-CA--GCCGGu -3'
miRNA:   3'- cUGCGCGA----CCUGaGGGuGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 8257 0.69 0.838886
Target:  5'- cGGCGCGCcgGGACgCCC-Cu---CCGGg -3'
miRNA:   3'- -CUGCGCGa-CCUGaGGGuGuuuuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 8329 0.67 0.904511
Target:  5'- gGGCGCGC-GGGCcucgaucgcgCCCGCcGGACgCGGa -3'
miRNA:   3'- -CUGCGCGaCCUGa---------GGGUGuUUUG-GCC- -5'
29367 3' -54.7 NC_006151.1 + 13122 0.68 0.884622
Target:  5'- cACGCGC---GCUCCCGCGAcuucCCGGc -3'
miRNA:   3'- cUGCGCGaccUGAGGGUGUUuu--GGCC- -5'
29367 3' -54.7 NC_006151.1 + 13681 0.7 0.777039
Target:  5'- gGACGCGCcggccaaugcGGGCUCCCGgGAcGCgGGc -3'
miRNA:   3'- -CUGCGCGa---------CCUGAGGGUgUUuUGgCC- -5'
29367 3' -54.7 NC_006151.1 + 14221 0.67 0.916591
Target:  5'- cGACGauCGCgGGAC-CCgACGGuACCGGa -3'
miRNA:   3'- -CUGC--GCGaCCUGaGGgUGUUuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 16980 0.67 0.921713
Target:  5'- cGugGCGCcaggagcgguugUGGAC-CCgCGCGAAcauggcgcgggugGCCGGg -3'
miRNA:   3'- -CugCGCG------------ACCUGaGG-GUGUUU-------------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 17278 0.67 0.897462
Target:  5'- gGGCGgGCUgauacggagGGGCUCCC-CGGGcuucgagccguccGCCGGg -3'
miRNA:   3'- -CUGCgCGA---------CCUGAGGGuGUUU-------------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 19277 0.65 0.950036
Target:  5'- uGGCGCGCgGGGC-CCaccggggccagcggCGCGGgcGGCCGGu -3'
miRNA:   3'- -CUGCGCGaCCUGaGG--------------GUGUU--UUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 21089 0.66 0.937857
Target:  5'- cGGCGaGgaGGAgcCCCGCGggGAGCCGGg -3'
miRNA:   3'- -CUGCgCgaCCUgaGGGUGU--UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 21520 0.72 0.647584
Target:  5'- gGGCGgGCUcGGGCUUCgGcCGGGGCCGGg -3'
miRNA:   3'- -CUGCgCGA-CCUGAGGgU-GUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 22184 0.66 0.94257
Target:  5'- gGGCGCGUgugguaGACgUCCGCGGGGCCGa -3'
miRNA:   3'- -CUGCGCGac----CUGaGGGUGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 22794 0.66 0.937857
Target:  5'- cACGUGCUGGGCcgucUCCC-CG--GCCGu -3'
miRNA:   3'- cUGCGCGACCUG----AGGGuGUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 23897 0.68 0.89013
Target:  5'- cACGgGCUGGGCgucggucgcgggCCCgACGGGccGCCGGu -3'
miRNA:   3'- cUGCgCGACCUGa-----------GGG-UGUUU--UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 24056 0.67 0.91601
Target:  5'- aGAUGCGCaaaggugUGuGugUCCUACcgcucGGAGCCGGc -3'
miRNA:   3'- -CUGCGCG-------AC-CugAGGGUG-----UUUUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.