miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 141848 0.68 0.858083
Target:  5'- cGACGCGagGGGCUCgcgCCGCGcccucuggugccggaGGGCCGGg -3'
miRNA:   3'- -CUGCGCgaCCUGAG---GGUGU---------------UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 140472 1.09 0.003644
Target:  5'- gGACGCGCUGGACUCCCACAAAACCGGc -3'
miRNA:   3'- -CUGCGCGACCUGAGGGUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 140183 0.66 0.937857
Target:  5'- uGCGCacGCUGGAC-CCCAUcguGGCCa- -3'
miRNA:   3'- cUGCG--CGACCUGaGGGUGuu-UUGGcc -5'
29367 3' -54.7 NC_006151.1 + 139200 0.68 0.884622
Target:  5'- cGGgGCGCUGGAgCUCCUggcgGCGAcgcuGCCGc -3'
miRNA:   3'- -CUgCGCGACCU-GAGGG----UGUUu---UGGCc -5'
29367 3' -54.7 NC_006151.1 + 137336 0.66 0.932903
Target:  5'- -uCGCGCUGcuCUUCCcCGAGGCCGa -3'
miRNA:   3'- cuGCGCGACcuGAGGGuGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 137013 0.7 0.758055
Target:  5'- --gGCGCUGGGCgCCCugcuCGGccuGCCGGa -3'
miRNA:   3'- cugCGCGACCUGaGGGu---GUUu--UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 136821 0.68 0.8627
Target:  5'- cGACGCGCcgcgcGGGCUCUgcgaCGCGGccGCCGGc -3'
miRNA:   3'- -CUGCGCGa----CCUGAGG----GUGUUu-UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 136485 0.66 0.932903
Target:  5'- aGAUGgGCguccuccgGGACuacaucUCCCACG--ACCGGg -3'
miRNA:   3'- -CUGCgCGa-------CCUG------AGGGUGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 136415 0.66 0.937857
Target:  5'- uACGCGCgGGGC-CCCGCGGcggcgcacGCCGc -3'
miRNA:   3'- cUGCGCGaCCUGaGGGUGUUu-------UGGCc -5'
29367 3' -54.7 NC_006151.1 + 136349 0.66 0.927708
Target:  5'- --aGCGgcCUGGAC-CCCGCGGGGCUGc -3'
miRNA:   3'- cugCGC--GACCUGaGGGUGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 135772 0.71 0.707779
Target:  5'- cGGCGCcggGCUGGACgaggccuUCUCACu--GCCGGg -3'
miRNA:   3'- -CUGCG---CGACCUG-------AGGGUGuuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 134109 0.67 0.904511
Target:  5'- gGGCGgcUGCUGGugUgCCGgagucCGGGGCCGGa -3'
miRNA:   3'- -CUGC--GCGACCugAgGGU-----GUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 131027 0.66 0.937857
Target:  5'- aGCGgGUgaaGGcCUCCCGCucgucGGGGCCGGa -3'
miRNA:   3'- cUGCgCGa--CCuGAGGGUG-----UUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 130558 0.7 0.795499
Target:  5'- cGGCGCGCUGccGC-CCCACGAGugcauCUGGa -3'
miRNA:   3'- -CUGCGCGACc-UGaGGGUGUUUu----GGCC- -5'
29367 3' -54.7 NC_006151.1 + 129261 0.67 0.91067
Target:  5'- cGGCGCGa-GGcaucCUUCCACGAAGCgCGGc -3'
miRNA:   3'- -CUGCGCgaCCu---GAGGGUGUUUUG-GCC- -5'
29367 3' -54.7 NC_006151.1 + 129127 0.75 0.515572
Target:  5'- aGGCGCGCUGGGCg-CCAaAGAgcGCCGGc -3'
miRNA:   3'- -CUGCGCGACCUGagGGUgUUU--UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 127467 0.66 0.939771
Target:  5'- --aGCGCUGGGCggcgcggaacgagCCGCGGAccccgcGCCGGa -3'
miRNA:   3'- cugCGCGACCUGag-----------GGUGUUU------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 124490 0.67 0.91067
Target:  5'- aACGCGCUcGGCaCCCGCG--GCUGGc -3'
miRNA:   3'- cUGCGCGAcCUGaGGGUGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 122518 0.67 0.91067
Target:  5'- gGACGCGCuccUGGACgCgCACGAcguguuCCGGc -3'
miRNA:   3'- -CUGCGCG---ACCUGaGgGUGUUuu----GGCC- -5'
29367 3' -54.7 NC_006151.1 + 122399 0.7 0.803615
Target:  5'- cGCGCGCUGGcggcGCUCgCCGCcguggacgccgccGAGGcCCGGg -3'
miRNA:   3'- cUGCGCGACC----UGAG-GGUG-------------UUUU-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.