miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 90284 0.7 0.786339
Target:  5'- cGACGaGCUGGAggCCCAUGcacgcggggauGAACCGGu -3'
miRNA:   3'- -CUGCgCGACCUgaGGGUGU-----------UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 99477 0.7 0.795499
Target:  5'- cGGCgGCGCUgGGGCUCCC-CGAGAa-GGg -3'
miRNA:   3'- -CUG-CGCGA-CCUGAGGGuGUUUUggCC- -5'
29367 3' -54.7 NC_006151.1 + 130558 0.7 0.795499
Target:  5'- cGGCGCGCUGccGC-CCCACGAGugcauCUGGa -3'
miRNA:   3'- -CUGCGCGACc-UGaGGGUGUUUu----GGCC- -5'
29367 3' -54.7 NC_006151.1 + 99123 0.7 0.795499
Target:  5'- uGGCGCuGCUGGAC-CCCGgGgcgcAGGCCGu -3'
miRNA:   3'- -CUGCG-CGACCUGaGGGUgU----UUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 114433 0.7 0.800924
Target:  5'- cGCGUGCUGGACcgCCUGCucggggccugcGCCGGc -3'
miRNA:   3'- cUGCGCGACCUGa-GGGUGuuu--------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 122399 0.7 0.803615
Target:  5'- cGCGCGCUGGcggcGCUCgCCGCcguggacgccgccGAGGcCCGGg -3'
miRNA:   3'- cUGCGCGACC----UGAG-GGUG-------------UUUU-GGCC- -5'
29367 3' -54.7 NC_006151.1 + 119004 0.69 0.812484
Target:  5'- -cCGCGCUGGACgacuggCCCGugcucucCGAGGCgGGc -3'
miRNA:   3'- cuGCGCGACCUGa-----GGGU-------GUUUUGgCC- -5'
29367 3' -54.7 NC_006151.1 + 31967 0.69 0.813361
Target:  5'- gGACGCG--GGACgugCCCGCcgccugGGAGCCGGc -3'
miRNA:   3'- -CUGCGCgaCCUGa--GGGUG------UUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 81781 0.69 0.813361
Target:  5'- gGACGCGCUcGGCgcgCCCGuCGAAGagcCCGGc -3'
miRNA:   3'- -CUGCGCGAcCUGa--GGGU-GUUUU---GGCC- -5'
29367 3' -54.7 NC_006151.1 + 120311 0.69 0.821186
Target:  5'- cGACGgGCUcgggcagccucucGGACgccgcgcgcgCCCGCGugGCCGGg -3'
miRNA:   3'- -CUGCgCGA-------------CCUGa---------GGGUGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 68258 0.69 0.822047
Target:  5'- aGACGCGCgcgGcGACggUCGCGGcGCCGGg -3'
miRNA:   3'- -CUGCGCGa--C-CUGagGGUGUUuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 106340 0.69 0.822047
Target:  5'- cGCGCGCUGGACgcgguggaCACGcuGGACgCGGg -3'
miRNA:   3'- cUGCGCGACCUGagg-----GUGU--UUUG-GCC- -5'
29367 3' -54.7 NC_006151.1 + 27327 0.69 0.822047
Target:  5'- gGACGgGg-GGcuGCUCCC-CGGGACCGGg -3'
miRNA:   3'- -CUGCgCgaCC--UGAGGGuGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 39206 0.69 0.830558
Target:  5'- uGCaCGCcGGACUCgCACGccuGGGCCGGg -3'
miRNA:   3'- cUGcGCGaCCUGAGgGUGU---UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 8257 0.69 0.838886
Target:  5'- cGGCGCGCcgGGACgCCC-Cu---CCGGg -3'
miRNA:   3'- -CUGCGCGa-CCUGaGGGuGuuuuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 77107 0.69 0.838886
Target:  5'- gGGCGCgGC-GGGCgcgcgCCCACAAAgGCCGa -3'
miRNA:   3'- -CUGCG-CGaCCUGa----GGGUGUUU-UGGCc -5'
29367 3' -54.7 NC_006151.1 + 102406 0.69 0.838886
Target:  5'- cGGCGCGCgucGCgcggCCCGCGAAcgaggccaugcACCGGg -3'
miRNA:   3'- -CUGCGCGaccUGa---GGGUGUUU-----------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 64468 0.69 0.843792
Target:  5'- cGGCGCGCgccgccgcggcggGGACgCCCGC-GGGCgCGGg -3'
miRNA:   3'- -CUGCGCGa------------CCUGaGGGUGuUUUG-GCC- -5'
29367 3' -54.7 NC_006151.1 + 103170 0.69 0.847024
Target:  5'- uGGCGCGCuucgacgccaUGGACgccgCCCugGcgGCCGc -3'
miRNA:   3'- -CUGCGCG----------ACCUGa---GGGugUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 37866 0.69 0.847024
Target:  5'- -cCGCGCcgcGGACcCCCGC---GCCGGg -3'
miRNA:   3'- cuGCGCGa--CCUGaGGGUGuuuUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.