miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 28845 0.66 0.937857
Target:  5'- gGACGCGggcccGGCUCCCcCAuuGGCCGGc -3'
miRNA:   3'- -CUGCGCgac--CUGAGGGuGUu-UUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 58477 0.66 0.937857
Target:  5'- cGACGaCGUcggcguccacgUGGAUgaugCCCGCGcgcGGGCCGGc -3'
miRNA:   3'- -CUGC-GCG-----------ACCUGa---GGGUGU---UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 96329 0.66 0.933409
Target:  5'- cGCGCGCguagagcgccggguaGGcCUCCCGcCAGAACCa- -3'
miRNA:   3'- cUGCGCGa--------------CCuGAGGGU-GUUUUGGcc -5'
29367 3' -54.7 NC_006151.1 + 54704 0.66 0.932903
Target:  5'- aGCGUGCUGGGCcagggCCUggACGAGgugGCCGa -3'
miRNA:   3'- cUGCGCGACCUGa----GGG--UGUUU---UGGCc -5'
29367 3' -54.7 NC_006151.1 + 65725 0.66 0.932903
Target:  5'- cGCGCgGCUGcGCgcggCCCA-GGAGCCGGg -3'
miRNA:   3'- cUGCG-CGACcUGa---GGGUgUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 136485 0.66 0.932903
Target:  5'- aGAUGgGCguccuccgGGACuacaucUCCCACG--ACCGGg -3'
miRNA:   3'- -CUGCgCGa-------CCUG------AGGGUGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 59358 0.66 0.932903
Target:  5'- cGCGCGCacgGGGCg-CCGCGcgGCCGu -3'
miRNA:   3'- cUGCGCGa--CCUGagGGUGUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 83360 0.66 0.932903
Target:  5'- cGGCGCGCgcgcGGGCgcgcaggCgCCGCAGGugcucguCCGGg -3'
miRNA:   3'- -CUGCGCGa---CCUGa------G-GGUGUUUu------GGCC- -5'
29367 3' -54.7 NC_006151.1 + 137336 0.66 0.932903
Target:  5'- -uCGCGCUGcuCUUCCcCGAGGCCGa -3'
miRNA:   3'- cuGCGCGACcuGAGGGuGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 89514 0.66 0.932395
Target:  5'- uGugGCGCagcGGACguggUCCGCcucgagcagcgccGAGGCCGGu -3'
miRNA:   3'- -CugCGCGa--CCUGa---GGGUG-------------UUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 29493 0.66 0.929815
Target:  5'- gGGCGCGCUGGcCUCgagccagcccuCCGCGgcgaugaagacggauGAGCgGGg -3'
miRNA:   3'- -CUGCGCGACCuGAG-----------GGUGU---------------UUUGgCC- -5'
29367 3' -54.7 NC_006151.1 + 112621 0.66 0.927708
Target:  5'- --gGCGCUGGACgagCCCugccGCGuguGCCGc -3'
miRNA:   3'- cugCGCGACCUGa--GGG----UGUuu-UGGCc -5'
29367 3' -54.7 NC_006151.1 + 136349 0.66 0.927708
Target:  5'- --aGCGgcCUGGAC-CCCGCGGGGCUGc -3'
miRNA:   3'- cugCGC--GACCUGaGGGUGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 66074 0.66 0.927708
Target:  5'- gGACGgcCGcCUGGGCUUCCACGcGGGCCu- -3'
miRNA:   3'- -CUGC--GC-GACCUGAGGGUGU-UUUGGcc -5'
29367 3' -54.7 NC_006151.1 + 85327 0.66 0.927175
Target:  5'- uACGCGCUGGagggccacagcguGCUCgCCGC---GCUGGc -3'
miRNA:   3'- cUGCGCGACC-------------UGAG-GGUGuuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 87324 0.67 0.92227
Target:  5'- -cCGUGCcGGcGCUCCCGgGccuGCCGGg -3'
miRNA:   3'- cuGCGCGaCC-UGAGGGUgUuu-UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 86708 0.67 0.921713
Target:  5'- cGAC-CGCUGGgaGCUggucgcggcgcgcCgCCGCGAGGCCGGc -3'
miRNA:   3'- -CUGcGCGACC--UGA-------------G-GGUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 16980 0.67 0.921713
Target:  5'- cGugGCGCcaggagcgguugUGGAC-CCgCGCGAAcauggcgcgggugGCCGGg -3'
miRNA:   3'- -CugCGCG------------ACCUGaGG-GUGUUU-------------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 50868 0.67 0.916591
Target:  5'- -cCGCGCccccGGAC-CCCGuccCGGGGCCGGc -3'
miRNA:   3'- cuGCGCGa---CCUGaGGGU---GUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 14221 0.67 0.916591
Target:  5'- cGACGauCGCgGGAC-CCgACGGuACCGGa -3'
miRNA:   3'- -CUGC--GCGaCCUGaGGgUGUUuUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.